Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-FC-A4JI-01A | TCGA-FC-A4JI | CUL5|OPCML | CUL5 | OPCML | 11 | 11 | 1 | -1 | 6 | 3 | 3 | 1.6 | 107880098 | 132307253 | tier1 | Out-of-frame | 4439 | NA | 0.37669 |
| PRAD | TCGA-CH-5792-01A | TCGA-CH-5792 | CXADR|APP | CXADR | APP | 21 | 21 | 1 | -1 | 220 | 221 | 209 | 0.23 | 18885490 | 27425664 | tier1 | In-frame | 4471 | NA | 0.38325 |
| PRAD | TCGA-ZG-A9M4-01A | TCGA-ZG-A9M4 | CXADR|HERC1 | CXADR | HERC1 | 21 | 15 | 1 | -1 | 4 | 6 | 6 | 0.28 | 18937929 | 63908881 | tier1 | Out-of-frame | 4472 | NA | 0.38021 |
| PRAD | TCGA-HC-7210-01A | TCGA-HC-7210 | DARS|THSD7B | DARS | THSD7B | 2 | 2 | -1 | 1 | 2 | 3 | 3 | 0.51 | 136690353 | 138163183 | tier3 | Out-of-frame | 4557 | NA | 0.36697 |
| PRAD | TCGA-HC-7818-01A | TCGA-HC-7818 | DCAF5|PTK2B | DCAF5 | PTK2B | 14 | 8 | -1 | 1 | 5 | 2 | 2 | 1 | 69619482 | 27169821 | tier1 | CDS-5UTR | 4574 | NA | 0.38323 |
| PRAD | TCGA-G9-A9S0-01A | TCGA-G9-A9S0 | DCAF6|MPZL1 | DCAF6 | MPZL1 | 1 | 1 | 1 | 1 | 8 | 9 | 9 | 0.6 | 167974031 | 167734820 | tier1 | In-frame | 4581 | NA | 0.36511 |
| PRAD | TCGA-EJ-7785-01A | TCGA-EJ-7785 | DENND4C|RHOBTB2 | DENND4C | RHOBTB2 | 9 | 8 | 1 | 1 | 8 | 5 | 5 | 0.4 | 19357152 | 22861938 | tier4 | CDS-5UTR | 4712 | NA | 0.35671 |
| PRAD | TCGA-KC-A7FA-01A | TCGA-KC-A7FA | DHCR24|LRP11 | DHCR24 | LRP11 | 1 | 6 | -1 | -1 | 2 | 17 | 2 | 0.14 | 55315306 | 150174296 | tier4 | 3UTR-CDS | 4774 | NA | 0.3573 |
| PRAD | TCGA-VN-A88L-01A | TCGA-VN-A88L | DLD|SCEL | DLD | SCEL | 7 | 13 | 1 | 1 | 51 | 25 | 24 | 0.95 | 107531734 | 78171680 | tier1 | Out-of-frame | 4864 | NA | 0.35131 |
| PRAD | TCGA-KK-A59X-01A | TCGA-KK-A59X | DLG1|CRYBG3 | DLG1 | CRYBG3 | 3 | 3 | -1 | 1 | 9 | 13 | 11 | 0.25 | 196921296 | 97631011 | tier1 | In-frame | 4872 | NA | 0.37534 |
| PRAD | TCGA-YL-A8S8-01A | TCGA-YL-A8S8 | DLG2|CARD17 | DLG2 | CARD17 | 11 | 11 | -1 | -1 | 5 | 7 | 6 | 0.13 | 83252725 | 104970148 | tier1 | Out-of-frame | 4880 | NA | 0.37934 |
| PRAD | TCGA-EJ-A65E-01A | TCGA-EJ-A65E | DUSP22|PTK7 | DUSP22 | PTK7 | 6 | 6 | 1 | 1 | 7 | 7 | 6 | 0.33 | 348841 | 43106587 | tier1 | In-frame | 5185 | NA | 0.37683 |
| PRAD | TCGA-ZG-A8QZ-01A | TCGA-ZG-A8QZ | DYNLT1|DUSP15 | DYNLT1 | DUSP15 | 6 | 20 | -1 | -1 | 19 | 10 | 10 | 0.62 | 159062351 | 30457400 | tier1 | CDS-5UTR | 5225 | NA | 0.35757 |
| PRAD | TCGA-XK-AAJA-01A | TCGA-XK-AAJA | DYRK1A|KCNJ6 | DYRK1A | KCNJ6 | 21 | 21 | 1 | -1 | 4 | 5 | 5 | 0.58 | 38792686 | 39087434 | tier1 | In-frame | 5230 | NA | 0.38066 |
| PRAD | TCGA-YL-A9WK-01A | TCGA-YL-A9WK | EHD1|BATF2 | EHD1 | BATF2 | 11 | 11 | -1 | -1 | 5 | 6 | 6 | 1.2 | 64641893 | 64762021 | tier1 | Out-of-frame | 5403 | NA | 0.37255 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | EHMT1|GRIN1 | EHMT1 | GRIN1 | 9 | 9 | 1 | 1 | 35 | 16 | 14 | 0.27 | 140707982 | 140036465 | tier1 | In-frame | 5410 | NA | 0.3732 |
| PRAD | TCGA-YL-A8HM-01A | TCGA-YL-A8HM | ELAVL2|CFTR | ELAVL2 | CFTR | 9 | 7 | -1 | 1 | 15 | 12 | 12 | 0.068 | 23821603 | 117304742 | tier1 | 5UTR-CDS | 5490 | NA | 0.37853 |
| PRAD | TCGA-HC-8265-01B | TCGA-HC-8265 | ELK4|SLC26A9 | ELK4 | SLC26A9 | 1 | 1 | -1 | -1 | 8 | 22 | 11 | 0.012 | 205592804 | 205904966 | tier2 | CDS-5UTR | 5507 | NA | 0.37214 |
| PRAD | TCGA-HC-7736-01A | TCGA-HC-7736 | ENOX2|SMARCA1 | ENOX2 | SMARCA1 | X | X | -1 | -1 | 2 | 3 | 3 | 0.18 | 129837094 | 128605303 | tier4 | Out-of-frame | 5595 | NA | 0.37031 |
| PRAD | TCGA-KK-A59X-01A | TCGA-KK-A59X | EPHA6|CNTN6 | EPHA6 | CNTN6 | 3 | 3 | 1 | 1 | 11 | 11 | 11 | 0.64 | 96585733 | 1443117 | tier1 | Out-of-frame | 5673 | NA | 0.36899 |
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