Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-A6AP-01A | TCGA-HC-A6AP | CHD1|SLCO6A1 | CHD1 | SLCO6A1 | 5 | 5 | -1 | -1 | 16 | 23 | 20 | 0.013 | 98228229 | 101748847 | tier1 | In-frame | 3612 | NA | 0.3676 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | CHD6|PTPRT | CHD6 | PTPRT | 20 | 20 | -1 | -1 | 4 | 51 | 48 | 0.41 | 40246979 | 40877462 | tier1 | 5UTR-CDS | 3632 | NA | 0.36291 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | CHRM3|SYT14 | CHRM3 | SYT14 | 1 | 1 | 1 | 1 | 11 | 5 | 5 | 0.038 | 239795586 | 210267667 | tier1 | 5UTR-CDS | 3705 | NA | 0.37722 |
| PRAD | TCGA-EJ-7783-01A | TCGA-EJ-7783 | CLDN12|SPCS3 | CLDN12 | SPCS3 | 7 | 4 | 1 | 1 | 2 | 10 | 6 | 0.048 | 90045268 | 177243321 | tier3 | 3UTR-CDS | 3772 | NA | 0.3447 |
| PRAD | TCGA-EJ-7788-01A | TCGA-EJ-7788 | CLEC12A|CLEC2A | CLEC12A | CLEC2A | 12 | 12 | 1 | -1 | 2 | 3 | 3 | 0.05 | 10124286 | 10069402 | tier2 | Out-of-frame | 3776 | NA | 0.33587 |
| PRAD | TCGA-EJ-A8FS-01A | TCGA-EJ-A8FS | CLPX|IGDCC4 | CLPX | IGDCC4 | 15 | 15 | -1 | -1 | 22 | 14 | 13 | 1.1 | 65477413 | 65686886 | tier2 | In-frame | 3849 | NA | 0.34562 |
| PRAD | TCGA-KK-A6E7-01A | TCGA-KK-A6E7 | CLSTN1|ANXA1 | CLSTN1 | ANXA1 | 1 | 9 | -1 | 1 | 2 | 19 | 18 | 5 | 9789086 | 75772570 | tier3 | 3UTR-5UTR | 3850 | NA | 0.37416 |
| PRAD | TCGA-HC-7080-01A | TCGA-HC-7080 | CLSTN1|IFFO2 | CLSTN1 | IFFO2 | 1 | 1 | -1 | -1 | 2 | 3 | 3 | 1.2 | 9883701 | 19247615 | tier3 | Out-of-frame | 3853 | NA | 0.35742 |
| PRAD | TCGA-V1-A9ZR-01A | TCGA-V1-A9ZR | CLTC|ETV4 | CLTC | ETV4 | 17 | 17 | 1 | -1 | 22 | 19 | 17 | 2.3 | 57744338 | 41613847 | tier1 | In-frame | 3862 | NA | 0.37619 |
| PRAD | TCGA-XQ-A8TB-01A | TCGA-XQ-A8TB | CNST|SMYD3 | CNST | SMYD3 | 1 | 1 | 1 | -1 | 3 | 1 | 1 | 3.4 | 246729965 | 246518396 | tier3 | 5UTR-5UTR | 3947 | NA | 0.3509 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | CNTNAP2|GSTK1 | CNTNAP2 | GSTK1 | 7 | 7 | 1 | 1 | 79 | 79 | 70 | 5.1 | 146536996 | 142960241 | tier1 | NA | 3955 | NA | 0.36226 |
| PRAD | TCGA-HC-7817-01B | TCGA-HC-7817 | COG5|TBC1D30 | COG5 | TBC1D30 | 7 | 12 | -1 | 1 | 4 | 2 | 2 | 1.4 | 107167682 | 65221615 | tier1 | CDS-5UTR | 3979 | NA | 0.342 |
| PRAD | TCGA-KK-A8IH-01A | TCGA-KK-A8IH | COL6A2|FOXP1 | COL6A2 | FOXP1 | 21 | 3 | 1 | -1 | 2 | 3 | 2 | 0.88 | 47552763 | 71007472 | tier3 | NA | 4045 | NA | 0.36588 |
| PRAD | TCGA-J4-A67T-01A | TCGA-J4-A67T | CPD|HDAC5 | CPD | HDAC5 | 17 | 17 | 1 | -1 | 87 | 131 | 114 | 0.5 | 28712254 | 42171202 | tier2 | In-frame | 4108 | NA | 0.37379 |
| PRAD | TCGA-CH-5740-01A | TCGA-CH-5740 | CPD|PIGW | CPD | PIGW | 17 | 17 | 1 | 1 | 24 | 23 | 21 | 0.73 | 28706744 | 34892943 | tier1 | CDS-5UTR | 4111 | NA | 0.33537 |
| PRAD | TCGA-M7-A720-01A | TCGA-M7-A720 | CREB1|SUCNR1 | CREB1 | SUCNR1 | 2 | 3 | 1 | 1 | 4 | 1 | 1 | 4.8 | 208425884 | 151597640 | tier4 | CDS-5UTR | 4191 | NA | 0.38246 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | CSDA|TMEM8A | CSDA | TMEM8A | 12 | 16 | -1 | -1 | 17 | 14 | 14 | 0.24 | 10862507 | 427848 | tier1 | Out-of-frame | 4260 | NA | 0.36826 |
| PRAD | TCGA-EJ-A46F-01A | TCGA-EJ-A46F | CSGALNACT1|TMEM150A | CSGALNACT1 | TMEM150A | 8 | 2 | -1 | -1 | 18 | 7 | 6 | 0.27 | 19315937 | 85826825 | tier1 | Out-of-frame | 4267 | NA | 0.33758 |
| PRAD | TCGA-V1-A9ZR-01A | TCGA-V1-A9ZR | CTNNA1|COTL1 | CTNNA1 | COTL1 | 5 | 16 | 1 | -1 | 3 | 6 | 5 | 0.071 | 138119061 | 84600561 | tier1 | Out-of-frame | 4347 | NA | 0.36782 |
| PRAD | TCGA-YL-A8SH-01B | TCGA-YL-A8SH | CTNND1|DTX4 | CTNND1 | DTX4 | 11 | 11 | 1 | 1 | 4 | 4 | 4 | 0.38 | 57529518 | 58949212 | tier1 | 5UTR-CDS | 4371 | NA | 0.38168 |
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