Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-FC-A4JI-01A | TCGA-FC-A4JI | CADM2|UBE2E2 | CADM2 | UBE2E2 | 3 | 3 | 1 | 1 | 10 | 14 | 13 | 0.38 | 85008819 | 23574045 | tier1 | Out-of-frame | 2887 | NA | 0.36835 |
| PRAD | TCGA-KK-A6E5-01A | TCGA-KK-A6E5 | CALR|BRD2 | CALR | BRD2 | 19 | 6 | 1 | 1 | 3 | 25 | 2 | 0.095 | 13055304 | 32944339 | tier1 | 3UTR-CDS | 2911 | NA | 0.37852 |
| PRAD | TCGA-VN-A88L-01A | TCGA-VN-A88L | CANT1|PPP3CA | CANT1 | PPP3CA | 17 | 4 | -1 | -1 | 2 | 19 | 7 | 0.59 | 76987799 | 102269435 | tier3 | NA | 2950 | NA | 0.3667 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | CAPNS1|ARHGEF26 | CAPNS1 | ARHGEF26 | 19 | 3 | 1 | 1 | 2 | 2 | 1 | 0.27 | 36641254 | 153842199 | tier3 | 3UTR-CDS | 2967 | NA | 0.35684 |
| PRAD | TCGA-H9-A6BY-01A | TCGA-H9-A6BY | CAPNS1|CCDC149 | CAPNS1 | CCDC149 | 19 | 4 | 1 | -1 | 2 | 1 | 1 | 0.29 | 36641254 | 24981770 | tier3 | 3UTR-5UTR | 2968 | NA | 0.36393 |
| PRAD | TCGA-EJ-5506-01A | TCGA-EJ-5506 | CAPNS1|MTA2 | CAPNS1 | MTA2 | 19 | 11 | 1 | -1 | 2 | 13 | 6 | 0.004 | 36641254 | 62363809 | tier3 | 3UTR-CDS | 2970 | NA | 0.37836 |
| PRAD | TCGA-CH-5792-01A | TCGA-CH-5792 | CASP8|NRP2 | CASP8 | NRP2 | 2 | 2 | 1 | 1 | 11 | 9 | 9 | 0.2 | 202098835 | 206547815 | tier1 | 5UTR-5UTR | 3024 | NA | 0.38191 |
| PRAD | TCGA-J9-A8CL-01A | TCGA-J9-A8CL | CBL|CXCR5 | CBL | CXCR5 | 11 | 11 | 1 | 1 | 5 | 3 | 3 | 0.13 | 119103405 | 118764305 | tier1 | Out-of-frame | 3070 | NA | 0.38594 |
| PRAD | TCGA-G9-6339-01A | TCGA-G9-6339 | CBLB|IL17RE | CBLB | IL17RE | 3 | 3 | -1 | 1 | 3 | 1 | 1 | 0.67 | 105572258 | 9944574 | tier2 | In-frame | 3077 | NA | 0.37817 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | CBLB|KIAA1524 | CBLB | KIAA1524 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 0.96 | 105572258 | 108304059 | tier2 | Out-of-frame | 3078 | NA | 0.37657 |
| PRAD | TCGA-CH-5761-01A | TCGA-CH-5761 | CD47|ZFR | CD47 | ZFR | 3 | 5 | -1 | -1 | 2 | 10 | 6 | 0.24 | 107762146 | 32395410 | tier4 | 3UTR-CDS | 3275 | NA | 0.36831 |
| PRAD | TCGA-EJ-5499-01A | TCGA-EJ-5499 | CD63|AARS | CD63 | AARS | 12 | 16 | -1 | -1 | 2 | 10 | 4 | 0.15 | 56119252 | 70295060 | tier4 | 3UTR-CDS | 3283 | NA | 0.36548 |
| PRAD | TCGA-HC-7747-01A | TCGA-HC-7747 | CD81|SURF4 | CD81 | SURF4 | 11 | 9 | 1 | -1 | 2 | 70 | 10 | 0.16 | 2418627 | 136239529 | tier3 | 3UTR-5UTR | 3305 | NA | 0.36311 |
| PRAD | TCGA-KK-A6E1-01A | TCGA-KK-A6E1 | CD9|PPP3CA | CD9 | PPP3CA | 12 | 4 | 1 | -1 | 2 | 9 | 1 | 0.26 | 6347425 | 102269435 | tier3 | NA | 3310 | NA | 0.3753 |
| PRAD | TCGA-G9-A9S7-01A | TCGA-G9-A9S7 | CDH1|CA1 | CDH1 | CA1 | 16 | 8 | 1 | -1 | 22 | 20 | 17 | 0.14 | 68772314 | 86245849 | tier1 | Out-of-frame | 3372 | NA | 0.37372 |
| PRAD | TCGA-VP-A879-01A | TCGA-VP-A879 | CDH1|TRHDE | CDH1 | TRHDE | 16 | 12 | 1 | 1 | 10 | 4 | 4 | 0.28 | 68835796 | 72771775 | tier1 | In-frame | 3377 | NA | 0.37579 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | CEP350|GPR161 | CEP350 | GPR161 | 1 | 1 | 1 | -1 | 11 | 10 | 9 | 0.11 | 179924277 | 168074132 | tier1 | 5UTR-5UTR | 3550 | NA | 0.36577 |
| PRAD | TCGA-HC-A8D0-01A | TCGA-HC-A8D0 | CERK|SCUBE1 | CERK | SCUBE1 | 22 | 22 | -1 | -1 | 6 | 1 | 1 | 0.05 | 47103740 | 43654341 | tier2 | In-frame | 3570 | NA | 0.35454 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | CERS6|RNF25 | CERS6 | RNF25 | 2 | 2 | 1 | -1 | 3 | 2 | 2 | 0.038 | 169417832 | 219533402 | tier1 | In-frame | 3579 | NA | 0.35937 |
| PRAD | TCGA-HC-A6AP-01A | TCGA-HC-A6AP | CHCHD6|MYLK | CHCHD6 | MYLK | 3 | 3 | 1 | -1 | 4 | 4 | 4 | 1.4 | 126423242 | 123550517 | tier1 | CDS-5UTR | 3607 | NA | 0.38706 |
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