Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-8258-01A | TCGA-HC-8258 | BMPR2|MARCH4 | BMPR2 | MARCH4 | 2 | 2 | 1 | -1 | 27 | 14 | 13 | 1.8 | 203407170 | 217124402 | tier1 | Out-of-frame | 2142 | NA | 0 |
| PRAD | TCGA-KC-A4BL-01A | TCGA-KC-A4BL | BRD1|RTN4RL1 | BRD1 | RTN4RL1 | 22 | 17 | -1 | -1 | 3 | 1 | 1 | 0.043 | 50197852 | 1841102 | tier3 | Out-of-frame | 2199 | NA | 0.3684 |
| PRAD | TCGA-EJ-5510-01A | TCGA-EJ-5510 | BTAF1|PTPRR | BTAF1 | PTPRR | 10 | 12 | 1 | -1 | 5 | 5 | 5 | 0.021 | 93726514 | 71095103 | tier1 | Out-of-frame | 2254 | NA | 0.37833 |
| PRAD | TCGA-G9-6361-01A | TCGA-G9-6361 | C11orf30|CDH23 | C11orf30 | CDH23 | 11 | 10 | 1 | 1 | 9 | 8 | 8 | 0.22 | 76158052 | 73490226 | tier1 | Out-of-frame | 2378 | NA | 0 |
| PRAD | TCGA-KK-A6E6-01A | TCGA-KK-A6E6 | C11orf49|C11orf24 | C11orf49 | C11orf24 | 11 | 11 | 1 | -1 | 3 | 1 | 1 | 0.49 | 47008861 | 68035719 | tier2 | CDS-5UTR | 2385 | NA | 0 |
| PRAD | TCGA-G9-6377-01A | TCGA-G9-6377 | C11orf49|CD5 | C11orf49 | CD5 | 11 | 11 | 1 | 1 | 2 | 5 | 5 | 0.22 | 47074069 | 60882528 | tier2 | In-frame | 2386 | NA | 0 |
| PRAD | TCGA-ZG-A9M4-01A | TCGA-ZG-A9M4 | C18orf1|CD226 | C18orf1 | CD226 | 18 | 18 | 1 | -1 | 7 | 4 | 4 | 0.12 | 13438383 | 67540482 | tier1 | In-frame | 2536 | NA | 0 |
| PRAD | TCGA-KC-A4BL-01A | TCGA-KC-A4BL | C19orf6|CNN2 | C19orf6 | CNN2 | 19 | 19 | -1 | 1 | 10 | 7 | 6 | 0.24 | 1014191 | 1031070 | tier1 | In-frame | 2581 | NA | 0 |
| PRAD | TCGA-EJ-5519-01A | TCGA-EJ-5519 | C1orf132|CHRM3 | C1orf132 | CHRM3 | 1 | 1 | -1 | 1 | 27 | 12 | 12 | 0.62 | 208041271 | 239990552 | tier1 | NA | 2586 | NA | 0 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | C1orf9|RASAL2 | C1orf9 | RASAL2 | 1 | 1 | 1 | 1 | 21 | 20 | 13 | 0.19 | 172520766 | 178359235 | tier1 | Out-of-frame | 2619 | NA | 0 |
| PRAD | TCGA-M7-A725-01A | TCGA-M7-A725 | C21orf2|UMODL1 | C21orf2 | UMODL1 | 21 | 21 | -1 | 1 | 55 | 39 | 36 | 0.12 | 45759001 | 43562206 | tier1 | CDS-3UTR | 2654 | NA | 0 |
| PRAD | TCGA-KK-A6E1-01A | TCGA-KK-A6E1 | C21orf63|CBR3 | C21orf63 | CBR3 | 21 | 21 | 1 | 1 | 10 | 17 | 17 | 1 | 33825816 | 37518374 | tier1 | Out-of-frame | 2659 | NA | 0 |
| PRAD | TCGA-KK-A6E8-01A | TCGA-KK-A6E8 | C3orf26|ENPP6 | C3orf26 | ENPP6 | 3 | 4 | 1 | -1 | 3 | 3 | 3 | 2 | 99536887 | 185074886 | tier1 | In-frame | 2707 | NA | 0 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | C5|SEMA4D | C5 | SEMA4D | 9 | 9 | -1 | -1 | 7 | 3 | 3 | 1.1 | 123837032 | 92070868 | tier1 | NA | 2732 | NA | 0.36636 |
| PRAD | TCGA-TP-A8TV-01A | TCGA-TP-A8TV | C7orf44|AMPH | C7orf44 | AMPH | 7 | 7 | -1 | -1 | 15 | 18 | 17 | 0.32 | 43769028 | 38574611 | tier1 | 5UTR-CDS | 2786 | NA | 0 |
| PRAD | TCGA-CH-5751-01A | TCGA-CH-5751 | C9orf102|ATP8A1 | C9orf102 | ATP8A1 | 9 | 4 | 1 | -1 | 4 | 2 | 2 | 0.032 | 98718295 | 42526864 | tier1 | In-frame | 2812 | NA | 0 |
| PRAD | TCGA-CH-5766-01A | TCGA-CH-5766 | CACNA1C|DDX55 | CACNA1C | DDX55 | 12 | 12 | 1 | 1 | 3 | 6 | 6 | 0.029 | 2711126 | 124104511 | tier4 | Out-of-frame | 2854 | NA | 0.36823 |
| PRAD | TCGA-EJ-A8FO-01A | TCGA-EJ-A8FO | CACNA1C|WWP2 | CACNA1C | WWP2 | 12 | 16 | 1 | 1 | 5 | 2 | 2 | 0.014 | 2229596 | 69820899 | tier1 | CDS-5UTR | 2861 | NA | 0.37683 |
| PRAD | TCGA-CH-5739-01A | TCGA-CH-5739 | CADM1|SORL1 | CADM1 | SORL1 | 11 | 11 | -1 | 1 | 4 | 4 | 4 | 1.4 | 115374989 | 121424646 | tier1 | In-frame | 2884 | NA | 0.37537 |
| PRAD | TCGA-EJ-7791-01A | TCGA-EJ-7791 | CADM2|ROBO1 | CADM2 | ROBO1 | 3 | 3 | 1 | -1 | 5 | 3 | 3 | 1 | 85008819 | 78676719 | tier1 | Out-of-frame | 2886 | non-validated | 0.37113 |
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