Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-5542-01A | TCGA-EJ-5542 | ARRDC3|SGCD | ARRDC3 | SGCD | 5 | 5 | -1 | 1 | 3 | 3 | 3 | 1.4 | 90672438 | 155771499 | tier1 | In-frame | 1463 | NA | 0.35512 |
| PRAD | TCGA-HC-A6AO-01A | TCGA-HC-A6AO | ASPH|RP1 | ASPH | RP1 | 8 | 8 | -1 | 1 | 3 | 3 | 2 | 0.032 | 62430087 | 55619003 | tier1 | Out-of-frame | 1541 | NA | 0.35327 |
| PRAD | TCGA-G9-A9S7-01A | TCGA-G9-A9S7 | ASTN2|TNFAIP8L1 | ASTN2 | TNFAIP8L1 | 9 | 19 | -1 | 1 | 2 | 5 | 5 | 0.053 | 119249638 | 4651879 | tier3 | CDS-5UTR | 1551 | NA | 0.34731 |
| PRAD | TCGA-VN-A943-01A | TCGA-VN-A943 | ATF3|USH2A | ATF3 | USH2A | 1 | 1 | 1 | -1 | 4 | 11 | 10 | 0.11 | 212791576 | 216011445 | tier1 | In-frame | 1598 | NA | 0.37504 |
| PRAD | TCGA-EJ-7784-01A | TCGA-EJ-7784 | ATF7IP|TMPRSS2 | ATF7IP | TMPRSS2 | 12 | 21 | 1 | -1 | 78 | 81 | 72 | 2 | 14610229 | 42861520 | tier1 | In-frame | 1611 | NA | 0.36975 |
| PRAD | TCGA-G9-6342-01A | TCGA-G9-6342 | ATG4C|LEPR | ATG4C | LEPR | 1 | 1 | 1 | 1 | 8 | 8 | 8 | 0.071 | 63307218 | 66098835 | tier1 | In-frame | 1627 | NA | 0.37248 |
| PRAD | TCGA-HC-7749-01A | TCGA-HC-7749 | ATMIN|GPR19 | ATMIN | GPR19 | 16 | 12 | 1 | -1 | 12 | 12 | 9 | 1.1 | 81069811 | 12848445 | tier1 | CDS-5UTR | 1653 | NA | 0.35815 |
| PRAD | TCGA-YL-A8SQ-01B | TCGA-YL-A8SQ | ATP11A|DHRS12 | ATP11A | DHRS12 | 13 | 13 | 1 | -1 | 8 | 6 | 6 | 0.62 | 113516889 | 52365393 | tier1 | In-frame | 1670 | NA | 0.34602 |
| PRAD | TCGA-HC-7737-01A | TCGA-HC-7737 | ATP1A1|FN1 | ATP1A1 | FN1 | 1 | 2 | 1 | -1 | 2 | 13 | 12 | 1.2 | 116947396 | 216274837 | tier4 | 3UTR-CDS | 1691 | non-validated | 0.37966 |
| PRAD | TCGA-XJ-A9DX-01A | TCGA-XJ-A9DX | ATP8B2|ADAR | ATP8B2 | ADAR | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 1.4 | 154313538 | 154569743 | tier2 | Out-of-frame | 1770 | NA | 0.35477 |
| PRAD | TCGA-EJ-7330-01A | TCGA-EJ-7330 | ATP8B4|OCA2 | ATP8B4 | OCA2 | 15 | 15 | -1 | -1 | 3 | 6 | 5 | 2.2 | 50168475 | 28327041 | tier1 | CDS-5UTR | 1773 | NA | 0.34023 |
| PRAD | TCGA-V1-A9ZG-01A | TCGA-V1-A9ZG | ATXN2|ADAM10 | ATXN2 | ADAM10 | 12 | 15 | -1 | -1 | 2 | 2 | 2 | 0.84 | 111947353 | 58974513 | tier3 | Out-of-frame | 1811 | NA | 0.37226 |
| PRAD | TCGA-HC-8265-01A | TCGA-HC-8265 | BAZ1B|ZP3 | BAZ1B | ZP3 | 7 | 7 | -1 | 1 | 11 | 9 | 9 | 0.11 | 72873866 | 76069567 | tier1 | In-frame | 1938 | NA | 0.37023 |
| PRAD | TCGA-HC-7209-01A | TCGA-HC-7209 | BCAM|PLAT | BCAM | PLAT | 19 | 8 | 1 | -1 | 2 | 1 | 1 | 0.067 | 45324677 | 42051245 | tier3 | NA | 1963 | NA | 0.37722 |
| PRAD | TCGA-ZG-A9LN-01A | TCGA-ZG-A9LN | BCL2L12|FLT3LG | BCL2L12 | FLT3LG | 19 | 19 | 1 | 1 | 4 | 6 | 6 | 0.067 | 50173745 | 49989272 | tier1 | 3UTR-3UTR | 2021 | NA | 0.36532 |
| PRAD | TCGA-XK-AAJA-01A | TCGA-XK-AAJA | BCL2L14|GPR19 | BCL2L14 | GPR19 | 12 | 12 | 1 | -1 | 14 | 7 | 6 | 0.44 | 12240320 | 12848445 | tier1 | CDS-5UTR | 2032 | NA | 0.35985 |
| PRAD | TCGA-HC-7231-01A | TCGA-HC-7231 | BMPR1A|ENTPD1 | BMPR1A | ENTPD1 | 10 | 10 | 1 | 1 | 19 | 27 | 26 | 1.6 | 88659883 | 97604233 | tier1 | In-frame | 2133 | NA | 0.37735 |
| PRAD | TCGA-SU-A7E7-01A | TCGA-SU-A7E7 | BMPR1B|ETV1 | BMPR1B | ETV1 | 4 | 7 | 1 | -1 | 11 | 45 | 41 | 0.38 | 95679219 | 14028764 | tier4 | 5UTR-5UTR | 2135 | NA | 0.38724 |
| PRAD | TCGA-EJ-7330-01A | TCGA-EJ-7330 | BMPR1B|PDLIM5 | BMPR1B | PDLIM5 | 4 | 4 | 1 | 1 | 9 | 22 | 20 | 0.099 | 95679219 | 95561427 | tier1 | 5UTR-CDS | 2137 | NA | 0.38726 |
| PRAD | TCGA-HC-A4ZV-01A | TCGA-HC-A4ZV | BMPR1B|PDLIM5 | BMPR1B | PDLIM5 | 4 | 4 | 1 | 1 | 2 | 2 | 1 | 0.099 | 95679219 | 95444875 | tier4 | 5UTR-CDS | 2138 | NA | 0.38726 |
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