Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-J4-A83J-01A | TCGA-J4-A83J | ADAMTS9|SYNPR | ADAMTS9 | SYNPR | 3 | 3 | -1 | 1 | 8 | 7 | 4 | 0.72 | 64579934 | 63542219 | tier2 | Out-of-frame | 445 | NA | 0.35504 |
| PRAD | TCGA-KK-A8IH-01A | TCGA-KK-A8IH | ADK|KCNMA1 | ADK | KCNMA1 | 10 | 10 | 1 | -1 | 2 | 4 | 4 | 1.8 | 75984349 | 78778857 | tier2 | In-frame | 517 | NA | 0.36559 |
| PRAD | TCGA-J4-AATZ-01A | TCGA-J4-AATZ | ADRBK2|ZNRF3 | ADRBK2 | ZNRF3 | 22 | 22 | 1 | 1 | 4 | 4 | 3 | 2.4 | 25961120 | 29383064 | tier1 | Out-of-frame | 548 | NA | 0.38142 |
| PRAD | TCGA-TK-A8OK-01A | TCGA-TK-A8OK | AFF4|SNTG2 | AFF4 | SNTG2 | 5 | 2 | -1 | 1 | 19 | 10 | 10 | 0.64 | 132227856 | 1204789 | tier1 | In-frame | 596 | NA | 0.37165 |
| PRAD | TCGA-HI-7168-01A | TCGA-HI-7168 | AGAP1|ADAMTS2 | AGAP1 | ADAMTS2 | 2 | 5 | 1 | -1 | 4 | 3 | 3 | 0.12 | 236653483 | 178553131 | tier1 | In-frame | 608 | NA | 0.36806 |
| PRAD | TCGA-EJ-5522-01A | TCGA-EJ-5522 | AGPAT6|ADAM9 | AGPAT6 | ADAM9 | 8 | 8 | 1 | 1 | 30 | 39 | 36 | 0.25 | 41456823 | 38899465 | tier1 | Out-of-frame | 661 | NA | 0.37635 |
| PRAD | TCGA-EJ-7784-01A | TCGA-EJ-7784 | AHNAK|ZNFX1 | AHNAK | ZNFX1 | 11 | 20 | -1 | -1 | 2 | 25 | 24 | 1.4 | 62283375 | 47863418 | tier4 | 3UTR-CDS | 698 | NA | 0.36616 |
| PRAD | TCGA-HC-7736-01A | TCGA-HC-7736 | AL137003.1|GLDN | AL137003.1 | GLDN | 6 | 15 | -1 | 1 | 4 | 1 | 1 | 0.048 | 16753464 | 51669646 | tier2 | NA | 770 | NA | 0.33331 |
| PRAD | TCGA-VP-A87K-01A | TCGA-VP-A87K | AL359075.1|EGF | AL359075.1 | EGF | 1 | 4 | -1 | 1 | 4 | 4 | 3 | 0.91 | 177927267 | 110914403 | tier1 | Out-of-frame | 778 | NA | 0.37725 |
| PRAD | TCGA-EJ-8470-01A | TCGA-EJ-8470 | AMBRA1|TRPC6 | AMBRA1 | TRPC6 | 11 | 11 | -1 | -1 | 14 | 8 | 7 | 0.25 | 46615378 | 101375529 | tier1 | 5UTR-CDS | 870 | NA | 0.37995 |
| PRAD | TCGA-EJ-5524-01A | TCGA-EJ-5524 | AMMECR1L|TNFRSF10C | AMMECR1L | TNFRSF10C | 2 | 8 | -1 | 1 | 13 | 8 | 8 | 0.99 | 128641777 | 22969233 | tier1 | 5UTR-CDS | 877 | NA | 0.36021 |
| PRAD | TCGA-KK-A8IH-01A | TCGA-KK-A8IH | ANK3|USP9Y | ANK3 | USP9Y | 10 | Y | -1 | 1 | 3 | 4 | 4 | 0.44 | 61815416 | 14968265 | tier1 | Out-of-frame | 911 | NA | 0.37419 |
| PRAD | TCGA-M7-A725-01A | TCGA-M7-A725 | ANKRD11|CDH15 | ANKRD11 | CDH15 | 16 | 16 | -1 | 1 | 2 | 3 | 3 | 0.27 | 89484692 | 89253837 | tier3 | 5UTR-CDS | 941 | NA | 0.3799 |
| PRAD | TCGA-XQ-A8TB-01A | TCGA-XQ-A8TB | ANKRD22|LRRTM3 | ANKRD22 | LRRTM3 | 10 | 10 | -1 | 1 | 17 | 14 | 12 | 2.4 | 90611344 | 68857345 | tier1 | In-frame | 973 | NA | 0.35588 |
| PRAD | TCGA-YJ-A8SW-01A | TCGA-YJ-A8SW | ANO7|RALBP1 | ANO7 | RALBP1 | 2 | 18 | 1 | 1 | 26 | 24 | 22 | 0.64 | 242157796 | 9530832 | tier1 | Out-of-frame | 1039 | NA | 0.36938 |
| PRAD | TCGA-HC-7213-01A | TCGA-HC-7213 | APLP2|PLAT | APLP2 | PLAT | 11 | 8 | 1 | -1 | 2 | 61 | 53 | 0.36 | 130014699 | 42051245 | tier3 | NA | 1129 | NA | 0.3802 |
| PRAD | TCGA-KK-A6E1-01A | TCGA-KK-A6E1 | ARF1|HSPA9 | ARF1 | HSPA9 | 1 | 5 | 1 | -1 | 54 | 140 | 130 | 0.82 | 228270466 | 137904738 | tier1 | 5UTR-CDS | 1180 | NA | 0.37598 |
| PRAD | TCGA-KK-A59X-01A | TCGA-KK-A59X | ARGLU1|CXCR4 | ARGLU1 | CXCR4 | 13 | 2 | -1 | -1 | 4 | 5 | 3 | 0.8 | 107219921 | 136873482 | tier1 | Out-of-frame | 1204 | NA | 0.38298 |
| PRAD | TCGA-YL-A8SA-01A | TCGA-YL-A8SA | ARHGAP12|SVIL | ARHGAP12 | SVIL | 10 | 10 | -1 | -1 | 2 | 1 | 1 | 0.4 | 32115232 | 29975580 | tier2 | CDS-5UTR | 1215 | NA | 0.37108 |
| PRAD | TCGA-V1-A8ML-01A | TCGA-V1-A8ML | ARHGAP44|C17orf78 | ARHGAP44 | C17orf78 | 17 | 17 | 1 | 1 | 9 | 5 | 5 | 0.98 | 12862214 | 35736075 | tier1 | Out-of-frame | 1257 | NA | 0 |
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