Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-XF-A9T4-01A | TCGA-XF-A9T4 | ZCCHC7|TEK | ZCCHC7 | TEK | 9 | 9 | 1 | 1 | 28 | 27 | 24 | 0.44 | 37126939 | 27197313 | tier1 | In-frame | 20172 | NA | 0 |
| BLCA | TCGA-GV-A3JW-01A | TCGA-GV-A3JW | ZDHHC20|EFHA1 | ZDHHC20 | EFHA1 | 13 | 13 | -1 | -1 | 2 | 2 | 1 | 0.44 | 21974512 | 22088557 | tier3 | In-frame | 20215 | NA | 0 |
| BLCA | TCGA-HQ-A2OE-01A | TCGA-HQ-A2OE | ZDHHC20|EFHA1 | ZDHHC20 | EFHA1 | 13 | 13 | -1 | -1 | 2 | 2 | 1 | 0.44 | 22033193 | 22096789 | tier4 | In-frame | 20216 | NA | 0 |
| BLCA | TCGA-DK-A3X2-01A | TCGA-DK-A3X2 | ZFP30|CEACAM7 | ZFP30 | CEACAM7 | 19 | 19 | -1 | -1 | 38 | 25 | 14 | 0.033 | 38135511 | 42191152 | tier1 | In-frame | 20270 | NA | 0 |
| BLCA | TCGA-FD-A43P-01A | TCGA-FD-A43P | ZMYND11|CDH18 | ZMYND11 | CDH18 | 10 | 5 | 1 | -1 | 4 | 7 | 7 | 0.55 | 267296 | 20255614 | tier1 | CDS-5UTR | 20337 | NA | 0 |
| BLCA | TCGA-GV-A3JW-01A | TCGA-GV-A3JW | ZNF430|CD19 | ZNF430 | CD19 | 19 | 16 | 1 | 1 | 2 | 3 | 3 | 0.95 | 21205687 | 28944232 | tier4 | Out-of-frame | 20499 | NA | 0 |
| BLCA | TCGA-FJ-A3ZF-01A | TCGA-FJ-A3ZF | ZNF613|SIGLEC7 | ZNF613 | SIGLEC7 | 19 | 19 | 1 | 1 | 26 | 14 | 12 | 1.8 | 52433149 | 51656320 | tier1 | 5UTR-CDS | 20590 | NA | 0 |
| BLCA | TCGA-4Z-AA84-01A | TCGA-4Z-AA84 | ZW10|UPK2 | ZW10 | UPK2 | 11 | 11 | -1 | 1 | 9 | 8 | 7 | 0.35 | 113639555 | 118828308 | tier1 | Out-of-frame | 20722 | NA | 0 |
| BRCA | TCGA-EW-A3U0-01A | TCGA-EW-A3U0 | ABCA1|HDHD3 | ABCA1 | HDHD3 | 9 | 9 | -1 | -1 | 3 | 3 | 3 | 2.4 | 107690216 | 116137847 | tier1 | 5UTR-5UTR | 34 | non-validated | 0.3794 |
| BRCA | TCGA-A2-A3XZ-01A | TCGA-A2-A3XZ | ABCA5|BCAS3 | ABCA5 | BCAS3 | 17 | 17 | -1 | 1 | 4 | 8 | 7 | 0.34 | 67323193 | 58786580 | tier1 | 5UTR-CDS | 43 | NA | 0.34517 |
| BRCA | TCGA-AC-A3TN-01A | TCGA-AC-A3TN | ABCB8|NOS3 | ABCB8 | NOS3 | 7 | 7 | 1 | 1 | 26 | 7 | 7 | 0.06 | 150725697 | 150706018 | tier1 | Out-of-frame | 50 | NA | 0.3738 |
| BRCA | TCGA-A7-A13D-01A | TCGA-A7-A13D | ABCB9|EIF2B1 | ABCB9 | EIF2B1 | 12 | 12 | -1 | -1 | 10 | 6 | 6 | 0.004 | 123428938 | 124107308 | tier1 | In-frame | 52 | validated | 0.36035 |
| BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | ABCC10|PPP2R5D | ABCC10 | PPP2R5D | 6 | 6 | 1 | 1 | 2 | 1 | 1 | 0.55 | 43401098 | 42974201 | tier3 | In-frame | 56 | NA | 0.36693 |
| BRCA | TCGA-B6-A0IK-01A | TCGA-B6-A0IK | ABCC3|AC217773.1 | ABCC3 | AC217773.1 | 17 | 17 | 1 | 1 | 2 | 1 | 1 | 100 | 48736729 | 44273734 | tier2 | NA | 59 | NA | 0.34646 |
| BRCA | TCGA-AC-A8OQ-01A | TCGA-AC-A8OQ | ABHD2|ACAN | ABHD2 | ACAN | 15 | 15 | 1 | 1 | 3 | 7 | 7 | 2.8 | 89698765 | 89398083 | tier1 | In-frame | 92 | NA | 0.36597 |
| BRCA | TCGA-A2-A0YT-01A | TCGA-A2-A0YT | AC110491.1|ARL6 | AC110491.1 | ARL6 | 3 | 3 | 1 | 1 | 7 | 3 | 3 | 0.8 | 97583491 | 97503799 | tier1 | NA | 212 | NA | 0.34714 |
| BRCA | TCGA-BH-A18T-01A | TCGA-BH-A18T | AC113191.1|NKAIN3 | AC113191.1 | NKAIN3 | 8 | 8 | 1 | 1 | 15 | 3 | 3 | 1.6 | 42958973 | 63492098 | tier1 | In-frame | 217 | NA | 0.33063 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | ACTB|HLA-DQB1 | ACTB | HLA-DQB1 | 7 | 6 | -1 | -1 | 2 | 6 | 6 | 0.12 | 5567255 | 32634461 | tier4 | 3UTR-5UTR | 343 | NA | 0.37649 |
| BRCA | TCGA-BH-A0DQ-01A | TCGA-BH-A0DQ | ACTN1|SCGN | ACTN1 | SCGN | 14 | 6 | -1 | 1 | 16 | 13 | 12 | 0.68 | 69343799 | 25691284 | tier1 | In-frame | 372 | NA | 0.37692 |
| BRCA | TCGA-AN-A0G0-01A | TCGA-AN-A0G0 | ACTN2|CHRM3 | ACTN2 | CHRM3 | 1 | 1 | 1 | 1 | 69 | 63 | 57 | 0.13 | 236850099 | 239841486 | tier1 | CDS-5UTR | 373 | non-validated | 0.3841 |
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