Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PCPG | TCGA-RW-A688-01A | TCGA-RW-A688 | TECTA|FOXN3 | TECTA | FOXN3 | 11 | 14 | 1 | -1 | 2 | 2 | 2 | 0.6 | 121000920 | 89629313 | tier2 | Out-of-frame | 17653 | NA | 0 |
| PCPG | TCGA-QT-A5XJ-01A | TCGA-QT-A5XJ | TRPM4|PPFIA3 | TRPM4 | PPFIA3 | 19 | 19 | 1 | 1 | 8 | 7 | 6 | 0.056 | 49675365 | 49636258 | tier2 | Out-of-frame | 18731 | NA | 0 |
| PCPG | TCGA-QT-A5XO-01A | TCGA-QT-A5XO | TSPAN9|DNM1L | TSPAN9 | DNM1L | 12 | 12 | 1 | 1 | 11 | 13 | 11 | 0.2 | 3310422 | 32854349 | tier1 | In-frame | 18810 | NA | 0 |
| PCPG | TCGA-S7-A7WW-01A | TCGA-S7-A7WW | TTYH3|NOC4L | TTYH3 | NOC4L | 7 | 12 | 1 | 1 | 2 | 1 | 1 | 0.08 | 2671912 | 132635526 | tier3 | Out-of-frame | 18925 | NA | 0 |
| PCPG | TCGA-QT-A5XJ-01A | TCGA-QT-A5XJ | XXbac-B461K10.4|PTGER3 | XXbac-B461K10.4 | PTGER3 | 22 | 1 | -1 | -1 | 37 | 10 | 9 | 2.3 | 18507047 | 71318542 | tier2 | 5UTR-3UTR | 19999 | NA | 0 |
| PRAD | TCGA-HC-7744-01A | TCGA-HC-7744 | AAK1|KCMF1 | AAK1 | KCMF1 | 2 | 2 | -1 | 1 | 14 | 13 | 11 | 0.57 | 69870010 | 85255012 | tier1 | In-frame | 10 | non-validated | 0.35628 |
| PRAD | TCGA-HC-7209-01A | TCGA-HC-7209 | AARSD1|CCR7 | AARSD1 | CCR7 | 17 | 17 | -1 | -1 | 23 | 5 | 5 | 0.048 | 41113209 | 38715194 | tier1 | In-frame | 19 | NA | 0.36006 |
| PRAD | TCGA-KK-A8I7-01A | TCGA-KK-A8I7 | ABCC1|PRKCB | ABCC1 | PRKCB | 16 | 16 | 1 | 1 | 3 | 4 | 4 | 0.044 | 16184445 | 23999829 | tier1 | In-frame | 55 | NA | 0.38354 |
| PRAD | TCGA-VP-A876-01A | TCGA-VP-A876 | ABCC4|CCDC169 | ABCC4 | CCDC169 | 13 | 13 | -1 | -1 | 4 | 5 | 4 | 0.22 | 95838955 | 36801518 | tier1 | Out-of-frame | 64 | NA | 0.35055 |
| PRAD | TCGA-V1-A9OX-01A | TCGA-V1-A9OX | AC004410.1|DOT1L | AC004410.1 | DOT1L | 19 | 19 | 1 | 1 | 2 | 1 | 1 | 0.007 | 2339207 | 2225387 | tier3 | In-frame | 140 | NA | 0.33637 |
| PRAD | TCGA-V1-A9O9-01A | TCGA-V1-A9O9 | ACPP|ATP2C1 | ACPP | ATP2C1 | 3 | 3 | 1 | 1 | 185 | 178 | 160 | 0.56 | 132036420 | 130649260 | tier1 | In-frame | 305 | NA | 0.35561 |
| PRAD | TCGA-EJ-5512-01A | TCGA-EJ-5512 | ACPP|OGT | ACPP | OGT | 3 | X | 1 | 1 | 2 | 11 | 10 | 0.05 | 132077596 | 70782980 | tier3 | 3UTR-CDS | 306 | NA | 0.37605 |
| PRAD | TCGA-HC-7233-01A | TCGA-HC-7233 | ACPP|SAFB2 | ACPP | SAFB2 | 3 | 19 | 1 | -1 | 306 | 342 | 319 | 0.37 | 132036420 | 5616346 | tier1 | In-frame | 307 | non-validated | 0.36917 |
| PRAD | TCGA-G9-6499-01A | TCGA-G9-6499 | ACPP|STAT6 | ACPP | STAT6 | 3 | 12 | 1 | -1 | 2 | 12 | 10 | 0.45 | 132077596 | 57496773 | tier4 | NA | 308 | NA | 0.37358 |
| PRAD | TCGA-G9-6498-01A | TCGA-G9-6498 | ACPP|ZNF462 | ACPP | ZNF462 | 3 | 9 | 1 | 1 | 3 | 14 | 14 | 0.095 | 132036420 | 109685635 | tier1 | CDS-5UTR | 309 | NA | 0.35923 |
| PRAD | TCGA-WW-A8ZI-01A | TCGA-WW-A8ZI | ACPP|ZNF462 | ACPP | ZNF462 | 3 | 9 | 1 | 1 | 35 | 23 | 21 | 0.095 | 132036420 | 109685635 | tier1 | CDS-5UTR | 310 | NA | 0.35923 |
| PRAD | TCGA-EJ-A46E-01A | TCGA-EJ-A46E | ACTN4|MGST2 | ACTN4 | MGST2 | 19 | 4 | 1 | 1 | 5 | 7 | 7 | 0.14 | 39138547 | 140616351 | tier1 | Out-of-frame | 381 | NA | 0.37464 |
| PRAD | TCGA-G9-6348-01A | TCGA-G9-6348 | ACVR2A|AKT3 | ACVR2A | AKT3 | 2 | 1 | 1 | -1 | 5 | 4 | 3 | 0.086 | 148602776 | 243828185 | tier1 | In-frame | 397 | NA | 0.38595 |
| PRAD | TCGA-EJ-7318-01B | TCGA-EJ-7318 | ACVR2A|KANK1 | ACVR2A | KANK1 | 2 | 9 | 1 | 1 | 3 | 2 | 2 | 0.12 | 148672903 | 676890 | tier1 | CDS-5UTR | 399 | NA | 0.37864 |
| PRAD | TCGA-EJ-5510-01A | TCGA-EJ-5510 | ADAM9|RGS20 | ADAM9 | RGS20 | 8 | 8 | 1 | 1 | 22 | 12 | 9 | 0.29 | 38854679 | 54791818 | tier1 | Out-of-frame | 422 | NA | 0.37634 |
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