Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PCPG | TCGA-QR-A6GS-01A | TCGA-QR-A6GS | DCAKD|ADAMTS7 | DCAKD | ADAMTS7 | 17 | 15 | -1 | -1 | 4 | 5 | 5 | 0.003 | 43128921 | 79083565 | tier1 | 5UTR-CDS | 4588 | NA | 0.35253 |
| PCPG | TCGA-WB-A81T-01A | TCGA-WB-A81T | DLK1|AC011333.1 | DLK1 | AC011333.1 | 14 | 5 | 1 | 1 | 2 | 16 | 6 | 0.15 | 101201464 | 173473096 | tier4 | NA | 4900 | NA | 0.35016 |
| PCPG | TCGA-WB-A81W-01A | TCGA-WB-A81W | DPP6|GGNBP2 | DPP6 | GGNBP2 | 7 | 17 | 1 | 1 | 16 | 29 | 24 | 1.7 | 154172122 | 34937774 | tier1 | Out-of-frame | 5084 | NA | 0.34992 |
| PCPG | TCGA-QR-A70V-01A | TCGA-QR-A70V | DPP6|IFIT3 | DPP6 | IFIT3 | 7 | 10 | 1 | 1 | 13 | 5 | 5 | 1.5 | 154461151 | 91098418 | tier1 | Out-of-frame | 5085 | NA | 0.3545 |
| PCPG | TCGA-SR-A6MP-01A | TCGA-SR-A6MP | EFR3A|SLFN12L | EFR3A | SLFN12L | 8 | 17 | 1 | -1 | 3 | 5 | 5 | 0.6 | 132958880 | 33807214 | tier1 | Out-of-frame | 5360 | NA | 0.33558 |
| PCPG | TCGA-QR-A70V-01A | TCGA-QR-A70V | EPB41|YTHDF2 | EPB41 | YTHDF2 | 1 | 1 | 1 | 1 | 8 | 4 | 3 | 0.18 | 29220349 | 29068915 | tier1 | 5UTR-CDS | 5634 | NA | 0.37638 |
| PCPG | TCGA-QT-A5XN-01A | TCGA-QT-A5XN | FSIP1|GPR176 | FSIP1 | GPR176 | 15 | 15 | -1 | -1 | 3 | 1 | 1 | 1.6 | 39909936 | 40099459 | tier2 | In-frame | 6810 | NA | 0.35734 |
| PCPG | TCGA-TT-A6YN-01A | TCGA-TT-A6YN | GFRA3|TTC8 | GFRA3 | TTC8 | 5 | 14 | -1 | 1 | 524 | 395 | 365 | 0.046 | 137588976 | 89341370 | tier1 | In-frame | 7045 | NA | 0.35664 |
| PCPG | TCGA-P7-A5NX-01A | TCGA-P7-A5NX | GGA1|CDC42EP1 | GGA1 | CDC42EP1 | 22 | 22 | 1 | 1 | 16 | 27 | 25 | 0.02 | 38004910 | 37962079 | tier1 | CDS-5UTR | 7046 | NA | 0.36909 |
| PCPG | TCGA-QT-A5XJ-01A | TCGA-QT-A5XJ | GNAS|EIF2AK2 | GNAS | EIF2AK2 | 20 | 2 | 1 | -1 | 2 | 297 | 24 | 0.38 | 57486241 | 37342384 | tier4 | NA | 7188 | NA | 0.392 |
| PCPG | TCGA-RW-A686-06A | TCGA-RW-A686 | GNAS|PLXNC1 | GNAS | PLXNC1 | 20 | 12 | 1 | 1 | 2 | 14 | 12 | 0.97 | 57486241 | 94642003 | tier3 | 3UTR-CDS | 7196 | NA | 0.377 |
| PCPG | TCGA-QR-A6GZ-01A | TCGA-QR-A6GZ | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 21 | 5 | 3 | 0.3 | 135586622 | 135572292 | tier4 | Out-of-frame | 8026 | NA | 0.3803 |
| PCPG | TCGA-QT-A5XO-01A | TCGA-QT-A5XO | KCNAB1|LRTM1 | KCNAB1 | LRTM1 | 3 | 3 | 1 | -1 | 2 | 3 | 2 | 0.72 | 156233009 | 54959242 | tier2 | In-frame | 8566 | NA | 0.3564 |
| PCPG | TCGA-RW-A688-01A | TCGA-RW-A688 | KCNMA1|HIVEP3 | KCNMA1 | HIVEP3 | 10 | 1 | -1 | -1 | 7 | 4 | 4 | 0.25 | 78943179 | 41984159 | tier1 | In-frame | 8587 | NA | 0.37758 |
| PCPG | TCGA-QT-A5XN-01A | TCGA-QT-A5XN | KIAA1737|NGFR | KIAA1737 | NGFR | 14 | 17 | 1 | 1 | 16 | 16 | 15 | 0.16 | 77564704 | 47579425 | tier1 | 5UTR-CDS | 8900 | NA | 0.37599 |
| PCPG | TCGA-WB-A80K-01A | TCGA-WB-A80K | MAML3|FAM171A2 | MAML3 | FAM171A2 | 4 | 17 | -1 | -1 | 31 | 26 | 24 | 0.011 | 141074014 | 42433956 | tier1 | Out-of-frame | 9790 | NA | 0.35668 |
| PCPG | TCGA-QT-A5XN-01A | TCGA-QT-A5XN | MEGF9|TTLL5 | MEGF9 | TTLL5 | 9 | 14 | -1 | 1 | 11 | 11 | 11 | 0.086 | 123476036 | 76230958 | tier1 | Out-of-frame | 10243 | NA | 0.34624 |
| PCPG | TCGA-WB-A81D-01A | TCGA-WB-A81D | MSH2|SLCO6A1 | MSH2 | SLCO6A1 | 2 | 5 | 1 | -1 | 13 | 12 | 9 | 1.2 | 47672796 | 101709198 | tier1 | Out-of-frame | 10701 | NA | 0.36696 |
| PCPG | TCGA-SR-A6MP-01A | TCGA-SR-A6MP | SLC39A11|SLC6A4 | SLC39A11 | SLC6A4 | 17 | 17 | -1 | -1 | 41 | 17 | 16 | 0.63 | 70943891 | 28538442 | tier1 | In-frame | 16199 | NA | 0 |
| PCPG | TCGA-W2-A7HC-01A | TCGA-W2-A7HC | SOCS5|ADCY2 | SOCS5 | ADCY2 | 2 | 5 | 1 | 1 | 12 | 13 | 8 | 0.092 | 46926588 | 7520851 | tier1 | 5UTR-CDS | 16573 | NA | 0 |
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