Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 207 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PAAD | TCGA-HZ-A49I-01A | TCGA-HZ-A49I | SEL1L3|HSD17B13 | SEL1L3 | HSD17B13 | 4 | 4 | -1 | -1 | 18 | 1 | 1 | 0.032 | 25835070 | 88239588 | tier3 | Out-of-frame | 15540 | NA | 0 |
| PAAD | TCGA-XD-AAUI-01A | TCGA-XD-AAUI | SKAP1|PSMD11 | SKAP1 | PSMD11 | 17 | 17 | -1 | 1 | 3 | 3 | 2 | 0.57 | 46423267 | 30773963 | tier1 | In-frame | 15975 | NA | 0 |
| PAAD | TCGA-F2-6879-01A | TCGA-F2-6879 | SLC39A11|SDK2 | SLC39A11 | SDK2 | 17 | 17 | -1 | -1 | 17 | 7 | 7 | 0.3 | 71080947 | 71364732 | tier1 | In-frame | 16198 | NA | 0 |
| PAAD | TCGA-2L-AAQE-01A | TCGA-2L-AAQE | SOCS7|PLXDC1 | SOCS7 | PLXDC1 | 17 | 17 | 1 | -1 | 4 | 4 | 4 | 0.48 | 36533668 | 37265644 | tier1 | Out-of-frame | 16582 | NA | 0 |
| PAAD | TCGA-IB-7893-01A | TCGA-IB-7893 | STARD4|ASTN2 | STARD4 | ASTN2 | 5 | 9 | -1 | -1 | 2 | 1 | 1 | 2.7 | 110836700 | 119770538 | tier2 | In-frame | 17011 | NA | 0 |
| PAAD | TCGA-3A-A9I9-01A | TCGA-3A-A9I9 | STYK1|GPR162 | STYK1 | GPR162 | 12 | 12 | -1 | 1 | 10 | 13 | 12 | 3.6 | 10774475 | 6934649 | tier1 | Out-of-frame | 17156 | NA | 0 |
| PAAD | TCGA-2J-AAB1-01A | TCGA-2J-AAB1 | THAP3|LCK | THAP3 | LCK | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 100 | 6685352 | 32739926 | tier2 | CDS-5UTR | 17761 | NA | 0 |
| PAAD | TCGA-IB-7885-01A | TCGA-IB-7885 | TIMP2|ANXA1 | TIMP2 | ANXA1 | 17 | 9 | -1 | 1 | 2 | 23 | 18 | 0.29 | 76849059 | 75772570 | tier3 | 3UTR-5UTR | 17832 | NA | 0 |
| PAAD | TCGA-LB-A7SX-01A | TCGA-LB-A7SX | TMEM170B|RP4-761I2.2 | TMEM170B | RP4-761I2.2 | 6 | 6 | 1 | 1 | 7 | 6 | 6 | 0.009 | 11538607 | 11134636 | tier1 | In-frame | 17988 | NA | 0 |
| PAAD | TCGA-HV-A5A3-01A | TCGA-HV-A5A3 | TSHZ3|CDH2 | TSHZ3 | CDH2 | 19 | 18 | -1 | -1 | 7 | 6 | 6 | 0.23 | 31840086 | 25593873 | tier1 | In-frame | 18775 | NA | 0 |
| PAAD | TCGA-2J-AABP-01A | TCGA-2J-AABP | TTC17|TMPRSS4 | TTC17 | TMPRSS4 | 11 | 11 | 1 | 1 | 2 | 1 | 1 | 0.006 | 43411371 | 117983984 | tier3 | In-frame | 18829 | NA | 0 |
| PAAD | TCGA-3E-AAAY-01A | TCGA-3E-AAAY | UBE2G2|ABCG1 | UBE2G2 | ABCG1 | 21 | 21 | -1 | 1 | 28 | 18 | 18 | 1.3 | 46207835 | 43704670 | tier1 | In-frame | 19072 | NA | 0 |
| PAAD | TCGA-FB-AAQ0-01A | TCGA-FB-AAQ0 | VAPA|METTL4 | VAPA | METTL4 | 18 | 18 | 1 | -1 | 2 | 5 | 3 | 0.9 | 9914332 | 2547528 | tier2 | Out-of-frame | 19502 | NA | 0 |
| PAAD | TCGA-US-A77G-01A | TCGA-US-A77G | VSIG1|MID2 | VSIG1 | MID2 | X | X | 1 | 1 | 2990 | 3504 | 3179 | 0.095 | 107288409 | 107169324 | tier1 | In-frame | 19687 | NA | 0 |
| PAAD | TCGA-IB-7652-01A | TCGA-IB-7652 | ZDHHC20|GJB6 | ZDHHC20 | GJB6 | 13 | 13 | -1 | -1 | 5 | 6 | 5 | 0.49 | 22033193 | 20803888 | tier1 | CDS-5UTR | 20217 | NA | 0 |
| PCPG | TCGA-WB-A81H-01A | TCGA-WB-A81H | AMPD3|ANKH | AMPD3 | ANKH | 11 | 5 | 1 | -1 | 28 | 22 | 20 | 1.2 | 10523137 | 14711419 | tier1 | In-frame | 885 | NA | 0.34083 |
| PCPG | TCGA-QR-A6GW-01A | TCGA-QR-A6GW | C16orf57|CX3CL1 | C16orf57 | CX3CL1 | 16 | 16 | 1 | 1 | 6 | 11 | 8 | 0.27 | 58048230 | 57413546 | tier1 | Out-of-frame | 2484 | NA | 0 |
| PCPG | TCGA-RW-A68B-01A | TCGA-RW-A68B | CACNA1C|PIAS4 | CACNA1C | PIAS4 | 12 | 19 | 1 | 1 | 3 | 2 | 2 | 0.4 | 2162777 | 4033098 | tier1 | In-frame | 2857 | NA | 0.37903 |
| PCPG | TCGA-PR-A5PF-01A | TCGA-PR-A5PF | CCT2|CPM | CCT2 | CPM | 12 | 12 | 1 | -1 | 15 | 13 | 9 | 1.8 | 69979304 | 69252851 | tier1 | Out-of-frame | 3245 | NA | 0.36834 |
| PCPG | TCGA-QR-A70P-01A | TCGA-QR-A70P | CIC|DLK1 | CIC | DLK1 | 19 | 14 | 1 | 1 | 2 | 5 | 1 | 0.008 | 42798456 | 101193333 | tier4 | NA | 3729 | NA | 0.359 |
|
Showing page 207 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.