Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PAAD | TCGA-LB-A7SX-01A | TCGA-LB-A7SX | IQGAP1|SEMA4B | IQGAP1 | SEMA4B | 15 | 15 | 1 | 1 | 8 | 6 | 6 | 0.98 | 90934105 | 90760671 | tier1 | Out-of-frame | 8320 | NA | 0.38447 |
| PAAD | TCGA-3A-A9IX-01A | TCGA-3A-A9IX | KIAA0319L|ODF2L | KIAA0319L | ODF2L | 1 | 1 | -1 | -1 | 4 | 1 | 1 | 0.28 | 35972213 | 86838223 | tier3 | In-frame | 8776 | NA | 0.36432 |
| PAAD | TCGA-LB-A7SX-01A | TCGA-LB-A7SX | KIF26B|C1orf101 | KIF26B | C1orf101 | 1 | 1 | 1 | 1 | 20 | 22 | 18 | 0.25 | 245530669 | 244773542 | tier1 | In-frame | 8985 | NA | 0 |
| PAAD | TCGA-HZ-A49I-01A | TCGA-HZ-A49I | LRIG3|ATF7 | LRIG3 | ATF7 | 12 | 12 | -1 | -1 | 86 | 42 | 38 | 3.4 | 59307763 | 53994805 | tier1 | CDS-5UTR | 9499 | NA | 0.3777 |
| PAAD | TCGA-F2-6879-01A | TCGA-F2-6879 | LRP6|PTPRO | LRP6 | PTPRO | 12 | 12 | -1 | 1 | 45 | 24 | 21 | 0.54 | 12332744 | 15733631 | tier1 | In-frame | 9549 | NA | 0.37122 |
| PAAD | TCGA-L1-A7W4-01A | TCGA-L1-A7W4 | MAGI1|LRIG1 | MAGI1 | LRIG1 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 0.074 | 66023671 | 66512933 | tier2 | Out-of-frame | 9767 | NA | 0.37576 |
| PAAD | TCGA-IB-A5SQ-01A | TCGA-IB-A5SQ | MIB1|GREB1L | MIB1 | GREB1L | 18 | 18 | 1 | 1 | 3 | 1 | 1 | 2.1 | 19321773 | 19085373 | tier4 | In-frame | 10332 | NA | 0.36617 |
| PAAD | TCGA-2J-AAB4-01A | TCGA-2J-AAB4 | MLL2|PTPRR | MLL2 | PTPRR | 12 | 12 | -1 | -1 | 3 | 2 | 2 | 0.058 | 49453396 | 71158558 | tier2 | NA | 10462 | NA | 0.38097 |
| PAAD | TCGA-US-A77E-01A | TCGA-US-A77E | MSLN|CLCN3 | MSLN | CLCN3 | 16 | 4 | 1 | 1 | 2 | 6 | 3 | 1.8 | 818865 | 170623929 | tier3 | NA | 10739 | NA | 0.36337 |
| PAAD | TCGA-US-A779-01A | TCGA-US-A779 | MTAP|PTPRD | MTAP | PTPRD | 9 | 9 | 1 | -1 | 7 | 24 | 15 | 0.18 | 21838009 | 9766851 | tier1 | CDS-5UTR | 10773 | NA | 0.3654 |
| PAAD | TCGA-IB-AAUQ-01A | TCGA-IB-AAUQ | MUC4|PCYT1A | MUC4 | PCYT1A | 3 | 3 | -1 | -1 | 6 | 3 | 3 | 3.4 | 195538607 | 195941244 | tier4 | NA | 10857 | NA | 0.36672 |
| PAAD | TCGA-FB-AAPZ-01A | TCGA-FB-AAPZ | ORAI2|SLC47A2 | ORAI2 | SLC47A2 | 7 | 17 | 1 | -1 | 14 | 16 | 16 | 3 | 102079628 | 19584983 | tier1 | In-frame | 12044 | NA | 0.35784 |
| PAAD | TCGA-IB-A6UF-01A | TCGA-IB-A6UF | PKP2|MRPS35 | PKP2 | MRPS35 | 12 | 12 | -1 | 1 | 6 | 8 | 5 | 0.29 | 32949043 | 27888380 | tier1 | Out-of-frame | 12929 | NA | 0.36676 |
| PAAD | TCGA-IB-7890-01A | TCGA-IB-7890 | PPFIBP1|TSPAN11 | PPFIBP1 | TSPAN11 | 12 | 12 | 1 | 1 | 2 | 3 | 2 | 0.34 | 27677298 | 31106915 | tier3 | 5UTR-5UTR | 13286 | NA | 0.36445 |
| PAAD | TCGA-IB-A7LX-01A | TCGA-IB-A7LX | PPP6R3|LRP5 | PPP6R3 | LRP5 | 11 | 11 | 1 | 1 | 20 | 20 | 19 | 3.3 | 68318654 | 68170951 | tier1 | In-frame | 13461 | NA | 0.36875 |
| PAAD | TCGA-F2-6880-01A | TCGA-F2-6880 | PTPRA|PRSS1 | PTPRA | PRSS1 | 20 | 7 | 1 | 1 | 2 | 4 | 2 | 0.1 | 2854406 | 142457330 | tier4 | 5UTR-5UTR | 13845 | NA | 0.37472 |
| PAAD | TCGA-HZ-A49I-01A | TCGA-HZ-A49I | RASSF3|TSPAN8 | RASSF3 | TSPAN8 | 12 | 12 | 1 | -1 | 10 | 6 | 5 | 100 | 65078674 | 71835367 | tier1 | CDS-5UTR | 14385 | NA | 0 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | RNF214|SIDT2 | RNF214 | SIDT2 | 11 | 11 | 1 | 1 | 19 | 8 | 8 | 0.45 | 117117664 | 117060882 | tier1 | In-frame | 14822 | NA | 0 |
| PAAD | TCGA-IB-7887-01A | TCGA-IB-7887 | RNF43|LIMCH1 | RNF43 | LIMCH1 | 17 | 4 | -1 | 1 | 2 | 2 | 1 | 0.11 | 56492687 | 41496553 | tier2 | In-frame | 14848 | NA | 0 |
| PAAD | TCGA-HZ-7924-01A | TCGA-HZ-7924 | S100A6|ERBB3 | S100A6 | ERBB3 | 1 | 12 | -1 | 1 | 2 | 204 | 174 | 0.14 | 153507075 | 56492035 | tier4 | 3UTR-5UTR | 15238 | NA | 0 |
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