Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PAAD | TCGA-3A-A9J0-01A | TCGA-3A-A9J0 | CASZ1|SLC9A1 | CASZ1 | SLC9A1 | 1 | 1 | -1 | -1 | 31 | 26 | 25 | 0.009 | 10753931 | 27440777 | tier1 | In-frame | 3035 | NA | 0.36664 |
| PAAD | TCGA-3A-A9IU-01A | TCGA-3A-A9IU | CCDC9|PVRL2 | CCDC9 | PVRL2 | 19 | 19 | 1 | 1 | 17 | 8 | 7 | 0.21 | 47764096 | 45368528 | tier1 | Out-of-frame | 3187 | NA | 0.36729 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | CD55|C4BPA | CD55 | C4BPA | 1 | 1 | 1 | 1 | 301 | 252 | 223 | 0.063 | 207512762 | 207317889 | tier1 | Out-of-frame | 3277 | NA | 0.36914 |
| PAAD | TCGA-HZ-7922-01A | TCGA-HZ-7922 | CERS5|C12orf28 | CERS5 | C12orf28 | 12 | 12 | -1 | 1 | 4 | 3 | 3 | 1 | 50560884 | 70249060 | tier1 | CDS-5UTR | 3574 | NA | 0 |
| PAAD | TCGA-IB-A7M4-01A | TCGA-IB-A7M4 | CERS6|STK39 | CERS6 | STK39 | 2 | 2 | 1 | -1 | 2 | 1 | 1 | 0.93 | 169313128 | 169038600 | tier4 | Out-of-frame | 3580 | NA | 0.36769 |
| PAAD | TCGA-3A-A9I9-01A | TCGA-3A-A9I9 | CLEC2D|ERC1 | CLEC2D | ERC1 | 12 | 12 | 1 | 1 | 2 | 1 | 1 | 0.089 | 9840682 | 1136914 | tier2 | CDS-5UTR | 3783 | NA | 0.35923 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | COL3A1|ERBB3 | COL3A1 | ERBB3 | 2 | 12 | 1 | 1 | 2 | 11 | 10 | 1.2 | 189877472 | 56492035 | tier4 | 3UTR-5UTR | 4016 | NA | 0.38597 |
| PAAD | TCGA-IB-7891-01A | TCGA-IB-7891 | COL3A1|MMP14 | COL3A1 | MMP14 | 2 | 14 | 1 | 1 | 2 | 1 | 1 | 0.74 | 189877472 | 23305829 | tier3 | NA | 4017 | NA | 0.37305 |
| PAAD | TCGA-IB-7651-01A | TCGA-IB-7651 | COL3A1|UTRN | COL3A1 | UTRN | 2 | 6 | 1 | 1 | 2 | 46 | 43 | 0.2 | 189877472 | 144665237 | tier3 | NA | 4023 | NA | 0.37865 |
| PAAD | TCGA-FB-AAPP-01A | TCGA-FB-AAPP | EML4|NTRK3 | EML4 | NTRK3 | 2 | 15 | 1 | -1 | 20 | 10 | 10 | 0.093 | 42491871 | 88576276 | tier1 | In-frame | 5568 | NA | 0.38997 |
| PAAD | TCGA-LB-A7SX-01A | TCGA-LB-A7SX | ERBB2|PPP1R1B | ERBB2 | PPP1R1B | 17 | 17 | 1 | 1 | 8 | 11 | 7 | 3.8 | 37883800 | 37791860 | tier1 | In-frame | 5725 | NA | 0.38487 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | FAM8A1|CAP2 | FAM8A1 | CAP2 | 6 | 6 | 1 | 1 | 14 | 3 | 3 | 1.9 | 17601352 | 17541204 | tier1 | In-frame | 6217 | NA | 0.36219 |
| PAAD | TCGA-HZ-A49I-01A | TCGA-HZ-A49I | FRS2|MMP19 | FRS2 | MMP19 | 12 | 12 | 1 | -1 | 8 | 2 | 2 | 1.9 | 69864310 | 56236222 | tier1 | 5UTR-CDS | 6765 | NA | 0.38116 |
| PAAD | TCGA-2J-AABR-01A | TCGA-2J-AABR | GPR35|ANKMY1 | GPR35 | ANKMY1 | 2 | 2 | 1 | -1 | 2 | 6 | 6 | 0.94 | 241558448 | 241468926 | tier4 | 5UTR-CDS | 7374 | NA | 0.35887 |
| PAAD | TCGA-FB-AAPZ-01A | TCGA-FB-AAPZ | GPR35|ANKMY1 | GPR35 | ANKMY1 | 2 | 2 | 1 | -1 | 3 | 3 | 3 | 0.94 | 241558448 | 241468926 | tier1 | 5UTR-CDS | 7375 | NA | 0.35887 |
| PAAD | TCGA-HZ-7925-01A | TCGA-HZ-7925 | HADH|ZP2 | HADH | ZP2 | 4 | 16 | 1 | -1 | 7 | 12 | 11 | 2 | 108911220 | 21214572 | tier1 | In-frame | 7582 | NA | 0.34983 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | HLA-DPA1|SQSTM1 | HLA-DPA1 | SQSTM1 | 6 | 5 | -1 | 1 | 2 | 27 | 7 | 0.63 | 33032794 | 179250858 | tier3 | 3UTR-CDS | 7834 | NA | 0.37917 |
| PAAD | TCGA-LB-A7SX-01A | TCGA-LB-A7SX | ICAM3|TYK2 | ICAM3 | TYK2 | 19 | 19 | -1 | -1 | 3 | 7 | 7 | 0.27 | 10445204 | 10468814 | tier1 | Out-of-frame | 8047 | NA | 0.37735 |
| PAAD | TCGA-L1-A7W4-01A | TCGA-L1-A7W4 | IFNGR2|NUDCD3 | IFNGR2 | NUDCD3 | 21 | 7 | 1 | -1 | 142 | 164 | 146 | 0.032 | 34805178 | 44444182 | tier1 | In-frame | 8064 | NA | 0.37266 |
| PAAD | TCGA-FB-AAQ1-01A | TCGA-FB-AAQ1 | IGSF11|UPK1B | IGSF11 | UPK1B | 3 | 3 | -1 | 1 | 2 | 2 | 2 | 0.077 | 118753378 | 118905561 | tier3 | CDS-5UTR | 8128 | NA | 0.34512 |
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