Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| OV | TCGA-13-1507-01A | TCGA-13-1507 | USP54|PCDH15 | USP54 | PCDH15 | 10 | 10 | -1 | -1 | 2 | 4 | 3 | 0.59 | 75331179 | 56926411 | tier2 | CDS-5UTR | 19419 | NA | 0 |
| OV | TCGA-23-1122-01A | TCGA-23-1122 | UTRN|WDR67 | UTRN | WDR67 | 6 | 8 | 1 | 1 | 6 | 5 | 3 | 1.5 | 145161968 | 124162276 | tier1 | In-frame | 19467 | NA | 0 |
| OV | TCGA-29-1785-01A | TCGA-29-1785 | VTCN1|PTGFRN | VTCN1 | PTGFRN | 1 | 1 | -1 | 1 | 7 | 27 | 25 | 2 | 117753446 | 117484337 | tier1 | Out-of-frame | 19691 | NA | 0 |
| OV | TCGA-13-1483-01A | TCGA-13-1483 | WWC1|ODZ2 | WWC1 | ODZ2 | 5 | 5 | 1 | 1 | 2 | 3 | 3 | 0.057 | 167719276 | 167589616 | tier2 | Out-of-frame | 19922 | NA | 0 |
| OV | TCGA-24-1551-01A | TCGA-24-1551 | ZDHHC5|SMTNL1 | ZDHHC5 | SMTNL1 | 11 | 11 | 1 | 1 | 4 | 19 | 17 | 0.34 | 57435659 | 57313354 | tier1 | 5UTR-CDS | 20226 | NA | 0 |
| OV | TCGA-09-1673-01A | TCGA-09-1673 | ZMYND8|SULF2 | ZMYND8 | SULF2 | 20 | 20 | -1 | -1 | 202 | 29 | 26 | 3.3 | 45976600 | 46319039 | tier1 | Out-of-frame | 20351 | NA | 0 |
| OV | TCGA-20-1684-01A | TCGA-20-1684 | ZNF276|JPH3 | ZNF276 | JPH3 | 16 | 16 | 1 | 1 | 9 | 8 | 2 | 0.015 | 89790117 | 87730186 | tier1 | Out-of-frame | 20431 | NA | 0 |
| OV | TCGA-23-1024-01A | TCGA-23-1024 | ZNF350|SLC12A5 | ZNF350 | SLC12A5 | 19 | 20 | -1 | 1 | 5 | 2 | 2 | 6.1 | 52477599 | 44669012 | tier1 | In-frame | 20473 | NA | 0 |
| OV | TCGA-09-1673-01A | TCGA-09-1673 | ZNF512|KCNK3 | ZNF512 | KCNK3 | 2 | 2 | 1 | 1 | 5 | 3 | 3 | 0.005 | 27840438 | 26950535 | tier1 | Out-of-frame | 20535 | NA | 0 |
| OV | TCGA-24-1558-01A | TCGA-24-1558 | ZNF709|CD177 | ZNF709 | CD177 | 19 | 19 | -1 | 1 | 11 | 2 | 1 | 1.5 | 12624558 | 43858359 | tier2 | NA | 20636 | non-validated | 0 |
| OV | TCGA-59-2348-01A | TCGA-59-2348 | ZNF83|TARM1 | ZNF83 | TARM1 | 19 | 19 | -1 | -1 | 3 | 55 | 54 | 100 | 53158814 | 54573414 | tier2 | 5UTR-CDS | 20684 | NA | 0 |
| PAAD | TCGA-3E-AAAY-01A | TCGA-3E-AAAY | ABCG1|BTG3 | ABCG1 | BTG3 | 21 | 21 | 1 | -1 | 5 | 2 | 1 | 0.64 | 43646024 | 18981470 | tier3 | CDS-5UTR | 79 | NA | 0.35811 |
| PAAD | TCGA-HZ-7924-01A | TCGA-HZ-7924 | ACTB|TM4SF4 | ACTB | TM4SF4 | 7 | 3 | -1 | 1 | 2 | 3 | 1 | 100 | 5567255 | 149192486 | tier4 | NA | 350 | NA | 0.37316 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | ACTB|TM4SF4 | ACTB | TM4SF4 | 7 | 3 | -1 | 1 | 2 | 3 | 1 | 100 | 5567255 | 149192486 | tier3 | NA | 351 | NA | 0.37316 |
| PAAD | TCGA-2J-AABK-01A | TCGA-2J-AABK | ADAM15|CHD1L | ADAM15 | CHD1L | 1 | 1 | 1 | 1 | 6 | 30 | 26 | 3.8 | 155032450 | 146739085 | tier1 | In-frame | 407 | NA | 0.37665 |
| PAAD | TCGA-L1-A7W4-01A | TCGA-L1-A7W4 | AGAP1|ERBB4 | AGAP1 | ERBB4 | 2 | 2 | 1 | -1 | 3 | 2 | 2 | 2.7 | 236715975 | 212289026 | tier1 | Out-of-frame | 612 | NA | 0.38896 |
| PAAD | TCGA-2J-AABR-01A | TCGA-2J-AABR | ANKMY1|GPR35 | ANKMY1 | GPR35 | 2 | 2 | -1 | 1 | 4 | 2 | 2 | 0.94 | 241492331 | 241569366 | tier1 | CDS-5UTR | 935 | NA | 0.35887 |
| PAAD | TCGA-US-A774-01A | TCGA-US-A774 | ATP11A|SPACA7 | ATP11A | SPACA7 | 13 | 13 | 1 | 1 | 2 | 4 | 4 | 0.88 | 113490565 | 113086758 | tier3 | In-frame | 1672 | NA | 0.33935 |
| PAAD | TCGA-3A-A9I5-01A | TCGA-3A-A9I5 | ATP1B1|NRG1 | ATP1B1 | NRG1 | 1 | 8 | 1 | 1 | 58 | 65 | 62 | 0.002 | 169080736 | 32453346 | tier1 | In-frame | 1697 | NA | 0.37945 |
| PAAD | TCGA-2L-AAQE-01A | TCGA-2L-AAQE | CACNG4|VMP1 | CACNG4 | VMP1 | 17 | 17 | 1 | 1 | 25 | 16 | 16 | 0.91 | 64961247 | 57851115 | tier1 | Out-of-frame | 2881 | NA | 0.33756 |
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