Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| OV | TCGA-20-1687-01A | TCGA-20-1687 | SKAP1|NQO2 | SKAP1 | NQO2 | 17 | 6 | -1 | 1 | 5 | 5 | 5 | 0.084 | 46423267 | 2994165 | tier1 | NA | 15974 | NA | 0 |
| OV | TCGA-25-1630-01A | TCGA-25-1630 | SLC2A8|GARNL3 | SLC2A8 | GARNL3 | 9 | 9 | 1 | 1 | 3 | 8 | 6 | 0.29 | 130167270 | 130151183 | tier1 | In-frame | 16137 | NA | 0 |
| OV | TCGA-30-1860-01A | TCGA-30-1860 | SLC39A9|SEC23IP | SLC39A9 | SEC23IP | 14 | 10 | 1 | 1 | 2 | 4 | 4 | 0.59 | 69866182 | 121689119 | tier2 | In-frame | 16214 | NA | 0 |
| OV | TCGA-25-1326-01A | TCGA-25-1326 | SLC44A1|NIPSNAP3A | SLC44A1 | NIPSNAP3A | 9 | 9 | 1 | 1 | 2 | 6 | 4 | 0.014 | 108007185 | 107513237 | tier2 | In-frame | 16229 | NA | 0 |
| OV | TCGA-VG-A8LO-01A | TCGA-VG-A8LO | SORL1|CEP164 | SORL1 | CEP164 | 11 | 11 | 1 | 1 | 29 | 175 | 165 | 2.2 | 121367758 | 117251330 | tier1 | In-frame | 16598 | NA | 0 |
| OV | TCGA-24-1431-01A | TCGA-24-1431 | SORL1|SC5DL | SORL1 | SC5DL | 11 | 11 | 1 | 1 | 44 | 14 | 14 | 0.95 | 121393698 | 121177766 | tier1 | In-frame | 16603 | NA | 0 |
| OV | TCGA-61-2094-01A | TCGA-61-2094 | SORL1|TBCEL | SORL1 | TBCEL | 11 | 11 | 1 | 1 | 3 | 12 | 12 | 0.57 | 121348952 | 120957487 | tier1 | Out-of-frame | 16605 | NA | 0 |
| OV | TCGA-13-1487-01A | TCGA-13-1487 | SORL1|TECTA | SORL1 | TECTA | 11 | 11 | 1 | 1 | 18 | 14 | 11 | 0.83 | 121360819 | 121058541 | tier1 | In-frame | 16606 | validated | 0 |
| OV | TCGA-09-1662-01A | TCGA-09-1662 | SP3|GPR155 | SP3 | GPR155 | 2 | 2 | -1 | -1 | 5 | 9 | 9 | 0.036 | 174819601 | 175318569 | tier1 | In-frame | 16638 | NA | 0 |
| OV | TCGA-25-1329-01A | TCGA-25-1329 | SPTLC3|PPAP2A | SPTLC3 | PPAP2A | 20 | 5 | 1 | -1 | 8 | 5 | 5 | 2.6 | 13090864 | 54737736 | tier1 | In-frame | 16807 | NA | 0 |
| OV | TCGA-04-1542-01A | TCGA-04-1542 | SSBP2|SERINC5 | SSBP2 | SERINC5 | 5 | 5 | -1 | -1 | 2 | 5 | 5 | 2.1 | 80762793 | 79407525 | tier2 | CDS-3UTR | 16908 | validated | 0 |
| OV | TCGA-04-1365-01A | TCGA-04-1365 | TANC1|PKP4 | TANC1 | PKP4 | 2 | 2 | 1 | 1 | 35 | 12 | 12 | 1.5 | 159825294 | 159530189 | tier1 | 5UTR-CDS | 17364 | NA | 0 |
| OV | TCGA-24-1431-01A | TCGA-24-1431 | TAX1BP3|PMP22 | TAX1BP3 | PMP22 | 17 | 17 | -1 | -1 | 14 | 14 | 10 | 1.1 | 3567973 | 15134397 | tier1 | Out-of-frame | 17438 | NA | 0 |
| OV | TCGA-04-1348-01A | TCGA-04-1348 | TMEM123|MMP7 | TMEM123 | MMP7 | 11 | 11 | -1 | -1 | 52 | 65 | 57 | 0.14 | 102319543 | 102395795 | tier1 | In-frame | 17954 | NA | 0 |
| OV | TCGA-24-2026-01A | TCGA-24-2026 | TMEM179B|SCGB1D1 | TMEM179B | SCGB1D1 | 11 | 11 | 1 | 1 | 4 | 9 | 9 | 100 | 62554999 | 61959528 | tier1 | Out-of-frame | 17992 | NA | 0 |
| OV | TCGA-13-A5FT-01A | TCGA-13-A5FT | TMEM30A|FILIP1 | TMEM30A | FILIP1 | 6 | 6 | -1 | -1 | 24 | 174 | 62 | 0.062 | 75994118 | 76124694 | tier1 | CDS-5UTR | 18017 | NA | 0 |
| OV | TCGA-30-1866-01A | TCGA-30-1866 | TMEM93|CEACAM19 | TMEM93 | CEACAM19 | 17 | 19 | 1 | 1 | 25 | 6 | 4 | 0.76 | 3572193 | 45185839 | tier2 | 5UTR-CDS | 18066 | NA | 0 |
| OV | TCGA-13-0893-01B | TCGA-13-0893 | TRAPPC10|GRID1 | TRAPPC10 | GRID1 | 21 | 10 | 1 | -1 | 2 | 8 | 7 | 1.5 | 45432441 | 87628937 | tier2 | Out-of-frame | 18568 | NA | 0 |
| OV | TCGA-24-2023-01A | TCGA-24-2023 | UNC45A|IQGAP1 | UNC45A | IQGAP1 | 15 | 15 | 1 | 1 | 6 | 13 | 10 | 0.3 | 91483703 | 91029262 | tier1 | In-frame | 19247 | NA | 0 |
| OV | TCGA-36-1570-01A | TCGA-36-1570 | UNC5A|TTC38 | UNC5A | TTC38 | 5 | 22 | 1 | 1 | 5 | 3 | 2 | 0.1 | 176237821 | 46681138 | tier1 | Out-of-frame | 19251 | validated | 0 |
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