Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| OV | TCGA-VG-A8LO-01A | TCGA-VG-A8LO | PARD6B|PTPN1 | PARD6B | PTPN1 | 20 | 20 | 1 | 1 | 2 | 16 | 16 | 0.17 | 49348389 | 49177900 | tier2 | In-frame | 12287 | NA | 0.38192 |
| OV | TCGA-24-2023-01A | TCGA-24-2023 | PHF12|SEZ6 | PHF12 | SEZ6 | 17 | 17 | -1 | -1 | 5 | 18 | 16 | 0.017 | 27277083 | 27309057 | tier1 | Out-of-frame | 12702 | NA | 0.37177 |
| OV | TCGA-VG-A8LO-01A | TCGA-VG-A8LO | PICALM|ME3 | PICALM | ME3 | 11 | 11 | -1 | -1 | 11 | 57 | 51 | 0.3 | 85707869 | 86198482 | tier1 | Out-of-frame | 12799 | NA | 0.34821 |
| OV | TCGA-5X-AA5U-01A | TCGA-5X-AA5U | PIGN|C18orf45 | PIGN | C18orf45 | 18 | 18 | -1 | -1 | 2 | 22 | 19 | 1.8 | 59828366 | 21001408 | tier2 | In-frame | 12814 | NA | 0 |
| OV | TCGA-23-2081-01A | TCGA-23-2081 | PKP4|PDE1A | PKP4 | PDE1A | 2 | 2 | 1 | -1 | 12 | 28 | 28 | 1 | 159459616 | 183011879 | tier1 | In-frame | 12931 | NA | 0.36672 |
| OV | TCGA-24-1431-01A | TCGA-24-1431 | PPP1CB|PLB1 | PPP1CB | PLB1 | 2 | 2 | 1 | 1 | 20 | 7 | 6 | 0.89 | 28999848 | 28796064 | tier1 | In-frame | 13340 | NA | 0.37643 |
| OV | TCGA-13-A5FT-01A | TCGA-13-A5FT | PRPF31|CACNG7 | PRPF31 | CACNG7 | 19 | 19 | 1 | 1 | 16 | 109 | 101 | 0.017 | 54622013 | 54445290 | tier1 | Out-of-frame | 13597 | NA | 0.34707 |
| OV | TCGA-13-A5FT-01A | TCGA-13-A5FT | PSAT1|MICB | PSAT1 | MICB | 9 | 6 | 1 | 1 | 2 | 15 | 14 | 2.3 | 80932720 | 31473394 | tier2 | Out-of-frame | 13694 | NA | 0.3498 |
| OV | TCGA-25-1324-01A | TCGA-25-1324 | PVR|HPN | PVR | HPN | 19 | 19 | 1 | 1 | 15 | 80 | 70 | 0.003 | 45162033 | 35556154 | tier1 | In-frame | 13968 | NA | 0 |
| OV | TCGA-13-0893-01B | TCGA-13-0893 | PXK|RPP14 | PXK | RPP14 | 3 | 3 | 1 | 1 | 5 | 2 | 2 | 0.34 | 58318817 | 58296036 | tier1 | CDS-5UTR | 13985 | NA | 0 |
| OV | TCGA-04-1362-01A | TCGA-04-1362 | RAB3IL1|NRG1 | RAB3IL1 | NRG1 | 11 | 8 | -1 | 1 | 17 | 5 | 5 | 0.073 | 61669914 | 32585467 | tier1 | Out-of-frame | 14091 | NA | 0 |
| OV | TCGA-09-1669-01A | TCGA-09-1669 | RASA2|SUCNR1 | RASA2 | SUCNR1 | 3 | 3 | 1 | 1 | 7 | 7 | 7 | 1 | 141235273 | 151597640 | tier1 | CDS-5UTR | 14357 | NA | 0 |
| OV | TCGA-36-1571-01A | TCGA-36-1571 | RBM47|EXOC1 | RBM47 | EXOC1 | 4 | 4 | -1 | 1 | 11 | 5 | 4 | 0.18 | 40546439 | 56744083 | tier1 | 5UTR-CDS | 14479 | validated | 0 |
| OV | TCGA-24-1544-01A | TCGA-24-1544 | RHPN2|GRIN2D | RHPN2 | GRIN2D | 19 | 19 | -1 | 1 | 9 | 5 | 5 | 0.016 | 33481420 | 48919259 | tier1 | In-frame | 14665 | non-validated | 0 |
| OV | TCGA-24-1557-01A | TCGA-24-1557 | RLF|MFSD2A | RLF | MFSD2A | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 0.48 | 40627308 | 40424373 | tier2 | In-frame | 14706 | non-validated | 0 |
| OV | TCGA-13-1495-01A | TCGA-13-1495 | RNF13|TM4SF4 | RNF13 | TM4SF4 | 3 | 3 | 1 | 1 | 2 | 3 | 3 | 100 | 149531140 | 149193610 | tier2 | 5UTR-CDS | 14757 | NA | 0 |
| OV | TCGA-24-1105-01A | TCGA-24-1105 | RNF41|MYO1C | RNF41 | MYO1C | 12 | 17 | -1 | -1 | 8 | 5 | 5 | 0.047 | 56610213 | 1385852 | tier1 | 5UTR-CDS | 14845 | NA | 0 |
| OV | TCGA-13-0893-01B | TCGA-13-0893 | SCAPER|LINGO1 | SCAPER | LINGO1 | 15 | 15 | -1 | -1 | 3 | 4 | 3 | 0.57 | 77176153 | 77908242 | tier1 | In-frame | 15385 | NA | 0 |
| OV | TCGA-5X-AA5U-01A | TCGA-5X-AA5U | SIPA1L3|ERC1 | SIPA1L3 | ERC1 | 19 | 12 | 1 | 1 | 3 | 25 | 23 | 0.77 | 38579491 | 1192330 | tier1 | In-frame | 15949 | NA | 0 |
| OV | TCGA-VG-A8LO-01A | TCGA-VG-A8LO | SKAP1|HOXB9 | SKAP1 | HOXB9 | 17 | 17 | -1 | -1 | 4 | 24 | 19 | 0.53 | 46423267 | 46700497 | tier1 | In-frame | 15972 | NA | 0 |
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