Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| OV | TCGA-20-0991-01A | TCGA-20-0991 | HUWE1|CLCN5 | HUWE1 | CLCN5 | X | X | -1 | 1 | 2 | 6 | 6 | 0.036 | 53600710 | 49806925 | tier2 | Out-of-frame | 8039 | NA | 0.3724 |
| OV | TCGA-13-1497-01A | TCGA-13-1497 | IGSF9|SLAMF9 | IGSF9 | SLAMF9 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.047 | 159912753 | 159921656 | tier2 | In-frame | 8135 | NA | 0.36105 |
| OV | TCGA-24-1616-01A | TCGA-24-1616 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 2 | 5 | 5 | 0.019 | 14153601 | 14141522 | tier2 | Out-of-frame | 8183 | NA | 0.36098 |
| OV | TCGA-09-1667-01C | TCGA-09-1667 | INADL|NFIA | INADL | NFIA | 1 | 1 | 1 | 1 | 4 | 2 | 2 | 0.24 | 62241006 | 61920975 | tier1 | In-frame | 8225 | NA | 0.3771 |
| OV | TCGA-61-1917-01A | TCGA-61-1917 | ITGB4|MYO15B | ITGB4 | MYO15B | 17 | 17 | 1 | 1 | 8 | 11 | 11 | 0.013 | 73717692 | 73620450 | tier1 | 5UTR-CDS | 8397 | NA | 0.3799 |
| OV | TCGA-13-0799-01A | TCGA-13-0799 | ITM2B|MATR3 | ITM2B | MATR3 | 13 | 5 | 1 | 1 | 11 | 54 | 44 | 1.3 | 48807613 | 138665034 | tier1 | In-frame | 8422 | NA | 0.3678 |
| OV | TCGA-09-1667-01C | TCGA-09-1667 | JAK1|HSD11B1 | JAK1 | HSD11B1 | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 100 | 65432016 | 209878262 | tier2 | 5UTR-5UTR | 8469 | NA | 0.38099 |
| OV | TCGA-24-1553-01A | TCGA-24-1553 | KCNMA1|DLG5 | KCNMA1 | DLG5 | 10 | 10 | -1 | -1 | 9 | 12 | 12 | 0.52 | 79397023 | 79584234 | tier1 | In-frame | 8582 | NA | 0.37922 |
| OV | TCGA-25-1329-01A | TCGA-25-1329 | KCNN1|SLC27A1 | KCNN1 | SLC27A1 | 19 | 19 | 1 | 1 | 5 | 1 | 1 | 0.027 | 18100652 | 17597372 | tier2 | NA | 8595 | NA | 0.34929 |
| OV | TCGA-23-1122-01A | TCGA-23-1122 | KIAA0195|TTYH2 | KIAA0195 | TTYH2 | 17 | 17 | 1 | 1 | 14 | 1 | 1 | 0.005 | 73452832 | 72227027 | tier2 | 5UTR-CDS | 8753 | NA | 0.3359 |
| OV | TCGA-59-A5PD-01A | TCGA-59-A5PD | KIF3C|ADCY3 | KIF3C | ADCY3 | 2 | 2 | -1 | -1 | 6 | 19 | 16 | 0.28 | 26203242 | 25095588 | tier1 | In-frame | 9005 | NA | 0.36747 |
| OV | TCGA-VG-A8LO-01A | TCGA-VG-A8LO | LGR6|GPR37L1 | LGR6 | GPR37L1 | 1 | 1 | 1 | 1 | 26 | 201 | 169 | 1.1 | 202205121 | 202096869 | tier1 | Out-of-frame | 9319 | NA | 0.34842 |
| OV | TCGA-VG-A8LO-01A | TCGA-VG-A8LO | LMBR1|PTPRN2 | LMBR1 | PTPRN2 | 7 | 7 | -1 | -1 | 7 | 54 | 49 | 0.83 | 156516806 | 157691429 | tier1 | In-frame | 9388 | NA | 0.35877 |
| OV | TCGA-23-1120-01A | TCGA-23-1120 | LPP|CASR | LPP | CASR | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 0.27 | 188202492 | 121980375 | tier2 | In-frame | 9456 | NA | 0.38094 |
| OV | TCGA-13-0760-01A | TCGA-13-0760 | LPP|F2 | LPP | F2 | 3 | 11 | 1 | 1 | 5 | 11 | 8 | 0.38 | 188059507 | 46741252 | tier1 | 5UTR-CDS | 9459 | NA | 0.37729 |
| OV | TCGA-13-A5FT-01A | TCGA-13-A5FT | LRP4|CELF1 | LRP4 | CELF1 | 11 | 11 | -1 | -1 | 2 | 10 | 6 | 0.052 | 46905422 | 47510576 | tier4 | In-frame | 9526 | NA | 0.34994 |
| OV | TCGA-OY-A56Q-01A | TCGA-OY-A56Q | LRRC68|CEACAM19 | LRRC68 | CEACAM19 | 19 | 19 | 1 | 1 | 47 | 291 | 248 | 0.25 | 45596785 | 45185839 | tier1 | Out-of-frame | 9586 | NA | 0.34935 |
| OV | TCGA-24-1549-01A | TCGA-24-1549 | MAGI3|DENND5A | MAGI3 | DENND5A | 1 | 11 | 1 | -1 | 2 | 1 | 1 | 1.2 | 113933971 | 9161401 | tier2 | Out-of-frame | 9773 | NA | 0.36283 |
| OV | TCGA-13-1512-01A | TCGA-13-1512 | MAN1A2|CD101 | MAN1A2 | CD101 | 1 | 1 | 1 | 1 | 4 | 7 | 6 | 1.1 | 118045592 | 117576482 | tier1 | Out-of-frame | 9803 | NA | 0.33581 |
| OV | TCGA-13-0801-01A | TCGA-13-0801 | MAP4|LRRC43 | MAP4 | LRRC43 | 3 | 12 | -1 | 1 | 2 | 8 | 5 | 0.016 | 48130263 | 122674677 | tier2 | 5UTR-CDS | 9887 | NA | 0.36485 |
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