Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-G2-A2EJ-01A | TCGA-G2-A2EJ | TNFRSF10A|EPB49 | TNFRSF10A | EPB49 | 8 | 8 | -1 | 1 | 3 | 1 | 1 | 0.93 | 23082269 | 21924216 | tier2 | CDS-5UTR | 18334 | NA | 0 |
| BLCA | TCGA-GV-A3QG-01A | TCGA-GV-A3QG | TPM1|ALK | TPM1 | ALK | 15 | 2 | 1 | -1 | 248 | 232 | 211 | 0.18 | 63354844 | 29446394 | tier1 | In-frame | 18489 | NA | 0 |
| BLCA | TCGA-GC-A3I6-01A | TCGA-GC-A3I6 | TPX2|HM13 | TPX2 | HM13 | 20 | 20 | 1 | 1 | 468 | 648 | 549 | 0.81 | 30327424 | 30115287 | tier1 | 5UTR-CDS | 18526 | NA | 0 |
| BLCA | TCGA-SY-A9G0-01A | TCGA-SY-A9G0 | TRAF2|CACNA1B | TRAF2 | CACNA1B | 9 | 9 | 1 | 1 | 2 | 2 | 2 | 0.24 | 139794972 | 140967940 | tier3 | In-frame | 18542 | NA | 0 |
| BLCA | TCGA-2F-A9KP-01A | TCGA-2F-A9KP | TRMT61A|AMN | TRMT61A | AMN | 14 | 14 | 1 | 1 | 14 | 7 | 7 | 0.074 | 103996646 | 103394763 | tier1 | Out-of-frame | 18706 | NA | 0 |
| BLCA | TCGA-KQ-A41N-01A | TCGA-KQ-A41N | TRPM4|PPFIA3 | TRPM4 | PPFIA3 | 19 | 19 | 1 | 1 | 17 | 8 | 8 | 0.056 | 49675365 | 49636258 | tier2 | Out-of-frame | 18730 | NA | 0 |
| BLCA | TCGA-GD-A3OS-01A | TCGA-GD-A3OS | TRUB2|KCNT1 | TRUB2 | KCNT1 | 9 | 9 | -1 | 1 | 36 | 36 | 33 | 1.1 | 131083878 | 138641944 | tier1 | Out-of-frame | 18745 | NA | 0 |
| BLCA | TCGA-XF-AAMG-01A | TCGA-XF-AAMG | TSPAN13|BZW2 | TSPAN13 | BZW2 | 7 | 7 | 1 | 1 | 33 | 40 | 34 | 0.48 | 16793655 | 16734459 | tier1 | In-frame | 18786 | NA | 0 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | TSPAN15|HK1 | TSPAN15 | HK1 | 10 | 10 | 1 | 1 | 93 | 56 | 51 | 0.24 | 71258152 | 71103583 | tier1 | In-frame | 18791 | NA | 0 |
| BLCA | TCGA-DK-A1AC-01A | TCGA-DK-A1AC | TTC7B|RPS6KA5 | TTC7B | RPS6KA5 | 14 | 14 | -1 | -1 | 6 | 6 | 6 | 0.52 | 91282519 | 91341704 | tier1 | 5UTR-CDS | 18890 | NA | 0 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | UBAP2|LINGO2 | UBAP2 | LINGO2 | 9 | 9 | -1 | -1 | 7 | 4 | 3 | 0.13 | 33932560 | 27950704 | tier1 | CDS-5UTR | 19044 | NA | 0 |
| BLCA | TCGA-CF-A27C-01A | TCGA-CF-A27C | UNC13B|PTPRD | UNC13B | PTPRD | 9 | 9 | 1 | -1 | 2 | 4 | 3 | 0.65 | 35386290 | 8636844 | tier2 | Out-of-frame | 19240 | validated | 0 |
| BLCA | TCGA-GV-A3QH-01A | TCGA-GV-A3QH | UPK2|SUPT16H | UPK2 | SUPT16H | 11 | 14 | 1 | -1 | 2 | 14 | 9 | 0.55 | 118829269 | 21829491 | tier4 | 3UTR-CDS | 19276 | NA | 0 |
| BLCA | TCGA-ZF-A9RL-01A | TCGA-ZF-A9RL | USP31|RHD | USP31 | RHD | 16 | 1 | -1 | 1 | 25 | 4 | 4 | 1.1 | 23113640 | 25611064 | tier1 | In-frame | 19349 | NA | 0 |
| BLCA | TCGA-E7-A7PW-01A | TCGA-E7-A7PW | USP4|RHOA | USP4 | RHOA | 3 | 3 | -1 | -1 | 12 | 17 | 14 | 0.81 | 49377357 | 49405981 | tier1 | Out-of-frame | 19387 | NA | 0 |
| BLCA | TCGA-K4-A5RH-01A | TCGA-K4-A5RH | VIM|PTPRC | VIM | PTPRC | 10 | 1 | 1 | 1 | 2 | 4 | 2 | 0.41 | 17279592 | 198710998 | tier3 | 3UTR-CDS | 19578 | NA | 0 |
| BLCA | TCGA-DK-A3IV-01A | TCGA-DK-A3IV | VPS41|NPSR1 | VPS41 | NPSR1 | 7 | 7 | -1 | 1 | 16 | 4 | 4 | 0.33 | 38908746 | 34851382 | tier1 | In-frame | 19651 | NA | 0 |
| BLCA | TCGA-K4-A3WU-01B | TCGA-K4-A3WU | XPR1|ARHGEF11 | XPR1 | ARHGEF11 | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 0.17 | 180651547 | 156955965 | tier3 | Out-of-frame | 19971 | NA | 0 |
| BLCA | TCGA-DK-AA75-01A | TCGA-DK-AA75 | XPR1|DEDD | XPR1 | DEDD | 1 | 1 | 1 | -1 | 2 | 8 | 8 | 0.061 | 180651547 | 161094316 | tier3 | CDS-5UTR | 19972 | NA | 0 |
| BLCA | TCGA-GU-A42P-01A | TCGA-GU-A42P | YES1|SCFD2 | YES1 | SCFD2 | 18 | 4 | -1 | -1 | 60 | 18 | 16 | 0.15 | 812115 | 53787037 | tier1 | 5UTR-CDS | 20033 | NA | 0 |
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