Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| OV | TCGA-36-1574-01A | TCGA-36-1574 | DDX60L|DSCAM | DDX60L | DSCAM | 4 | 21 | -1 | -1 | 11 | 1 | 1 | 0.17 | 169374275 | 41559914 | tier2 | In-frame | 4680 | non-validated | 0.37729 |
| OV | TCGA-13-0887-01A | TCGA-13-0887 | DGKG|CRYGS | DGKG | CRYGS | 3 | 3 | -1 | -1 | 7 | 3 | 3 | 0.81 | 186079735 | 186257386 | tier1 | 5UTR-CDS | 4758 | NA | 0.34181 |
| OV | TCGA-25-1328-01A | TCGA-25-1328 | DLG1|PAK2 | DLG1 | PAK2 | 3 | 3 | -1 | 1 | 2 | 28 | 24 | 0.002 | 197009550 | 196534653 | tier3 | In-frame | 4876 | NA | 0.38262 |
| OV | TCGA-13-0801-01A | TCGA-13-0801 | EHD1|ATG2A | EHD1 | ATG2A | 11 | 11 | -1 | -1 | 8 | 19 | 17 | 0.085 | 64645533 | 64662681 | tier1 | Out-of-frame | 5401 | NA | 0.36867 |
| OV | TCGA-61-2109-01A | TCGA-61-2109 | EIF2C2|PTK2 | EIF2C2 | PTK2 | 8 | 8 | -1 | -1 | 4 | 4 | 4 | 7.7 | 141645584 | 141712806 | tier1 | Out-of-frame | 5436 | NA | 0.38833 |
| OV | TCGA-13-1405-01A | TCGA-13-1405 | ETHE1|UPK3A | ETHE1 | UPK3A | 19 | 22 | -1 | 1 | 18 | 23 | 21 | 100 | 44030667 | 45691441 | tier2 | Out-of-frame | 5849 | NA | 0.35321 |
| OV | TCGA-OY-A56P-01A | TCGA-OY-A56P | ETNK1|MYO9B | ETNK1 | MYO9B | 12 | 19 | 1 | 1 | 10 | 37 | 35 | 0.014 | 22778520 | 17298744 | tier1 | CDS-5UTR | 5853 | NA | 0.37038 |
| OV | TCGA-36-1571-01A | TCGA-36-1571 | EXOC1|XKR3 | EXOC1 | XKR3 | 4 | 22 | 1 | -1 | 2 | 1 | 1 | 2.6 | 56737399 | 17288973 | tier2 | CDS-5UTR | 5894 | non-validated | 0.34988 |
| OV | TCGA-13-1487-01A | TCGA-13-1487 | EZR|C1orf50 | EZR | C1orf50 | 6 | 1 | -1 | 1 | 4 | 6 | 6 | 2.1 | 159239114 | 43239234 | tier1 | In-frame | 5964 | non-validated | 0 |
| OV | TCGA-23-2077-01A | TCGA-23-2077 | FAM160A2|APBB1 | FAM160A2 | APBB1 | 11 | 11 | -1 | -1 | 2 | 4 | 4 | 0.33 | 6255774 | 6432591 | tier2 | 5UTR-5UTR | 6069 | NA | 0.37564 |
| OV | TCGA-57-1586-01A | TCGA-57-1586 | FAM38A|CBFA2T3 | FAM38A | CBFA2T3 | 16 | 16 | -1 | -1 | 6 | 7 | 6 | 0.097 | 88798114 | 88968064 | tier1 | In-frame | 6164 | NA | 0.36329 |
| OV | TCGA-04-1517-01A | TCGA-04-1517 | FAM38A|GALNS | FAM38A | GALNS | 16 | 16 | -1 | -1 | 31 | 7 | 5 | 0.66 | 88815792 | 88880933 | tier1 | Out-of-frame | 6168 | NA | 0.34107 |
| OV | TCGA-59-2355-01A | TCGA-59-2355 | FBXO34|LGALS3 | FBXO34 | LGALS3 | 14 | 14 | 1 | 1 | 14 | 38 | 29 | 0.49 | 55738255 | 55604088 | tier1 | 5UTR-5UTR | 6351 | NA | 0.37149 |
| OV | TCGA-24-1424-01A | TCGA-24-1424 | FGFR2|USP10 | FGFR2 | USP10 | 10 | 16 | -1 | 1 | 34 | 26 | 24 | 1.9 | 123353223 | 84792322 | tier1 | In-frame | 6472 | NA | 0.38433 |
| OV | TCGA-29-A5NZ-01A | TCGA-29-A5NZ | FRAS1|MGST2 | FRAS1 | MGST2 | 4 | 4 | 1 | 1 | 9 | 57 | 53 | 0.35 | 79322041 | 140616351 | tier1 | Out-of-frame | 6708 | NA | 0.34491 |
| OV | TCGA-13-1505-01A | TCGA-13-1505 | GPR110|TRERF1 | GPR110 | TRERF1 | 6 | 6 | -1 | -1 | 3 | 1 | 1 | 0.43 | 46993590 | 42204149 | tier2 | Out-of-frame | 7356 | NA | 0.37872 |
| OV | TCGA-29-1699-01A | TCGA-29-1699 | GYS1|HOMER3 | GYS1 | HOMER3 | 19 | 19 | -1 | -1 | 5 | 10 | 10 | 0.25 | 49494559 | 19045219 | tier1 | In-frame | 7570 | NA | 0.36306 |
| OV | TCGA-20-0987-01A | TCGA-20-0987 | HIF1A|PRKCH | HIF1A | PRKCH | 14 | 14 | 1 | 1 | 2 | 1 | 1 | 0.5 | 62162557 | 61909829 | tier2 | Out-of-frame | 7756 | NA | 0.39003 |
| OV | TCGA-25-1321-01A | TCGA-25-1321 | HKR1|ATP1A3 | HKR1 | ATP1A3 | 19 | 19 | 1 | -1 | 10 | 4 | 4 | 0.4 | 37815167 | 42492714 | tier1 | 5UTR-CDS | 7809 | NA | 0.36548 |
| OV | TCGA-09-1659-01B | TCGA-09-1659 | HS2ST1|NXNL2 | HS2ST1 | NXNL2 | 1 | 9 | 1 | 1 | 2 | 3 | 3 | 0.35 | 87380843 | 91190002 | tier2 | CDS-3UTR | 7961 | NA | 0.33781 |
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