Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| OV | TCGA-24-1469-01A | TCGA-24-1469 | ANTXR1|APLF | ANTXR1 | APLF | 2 | 2 | 1 | 1 | 6 | 1 | 1 | 0.8 | 69298919 | 68804952 | tier3 | In-frame | 1042 | NA | 0.35961 |
| OV | TCGA-25-1324-01A | TCGA-25-1324 | ATP8A1|CRMP1 | ATP8A1 | CRMP1 | 4 | 4 | -1 | -1 | 14 | 114 | 105 | 0.93 | 42626553 | 5844888 | tier1 | In-frame | 1765 | NA | 0.36614 |
| OV | TCGA-24-1550-01A | TCGA-24-1550 | ATP8A2|CRYL1 | ATP8A2 | CRYL1 | 13 | 13 | 1 | -1 | 2 | 1 | 1 | 0.044 | 26436546 | 20987526 | tier2 | In-frame | 1769 | NA | 0.34977 |
| OV | TCGA-25-1877-01A | TCGA-25-1877 | AXL|ZNF565 | AXL | ZNF565 | 19 | 19 | 1 | -1 | 2 | 6 | 6 | 0.42 | 41762516 | 36686058 | tier2 | In-frame | 1839 | NA | 0.38737 |
| OV | TCGA-23-1030-01A | TCGA-23-1030 | C17orf63|SEZ6 | C17orf63 | SEZ6 | 17 | 17 | -1 | -1 | 3 | 9 | 9 | 0.18 | 27093604 | 27309057 | tier1 | In-frame | 2521 | NA | 0 |
| OV | TCGA-09-2048-01A | TCGA-09-2048 | C2CD3|SYTL1 | C2CD3 | SYTL1 | 11 | 1 | -1 | 1 | 2 | 5 | 5 | 2 | 73849765 | 27671788 | tier2 | CDS-5UTR | 2683 | NA | 0.36727 |
| OV | TCGA-23-1027-01A | TCGA-23-1027 | C2orf61|ALK | C2orf61 | ALK | 2 | 2 | -1 | -1 | 2 | 2 | 2 | 4.4 | 47357080 | 29754982 | tier2 | Out-of-frame | 2689 | NA | 0 |
| OV | TCGA-23-1027-01A | TCGA-23-1027 | CACHD1|ROR1 | CACHD1 | ROR1 | 1 | 1 | 1 | 1 | 5 | 4 | 4 | 1.1 | 64936625 | 64624664 | tier1 | Out-of-frame | 2850 | NA | 0.35934 |
| OV | TCGA-24-1553-01A | TCGA-24-1553 | CAMSAP1|KCNT1 | CAMSAP1 | KCNT1 | 9 | 9 | -1 | 1 | 2 | 4 | 4 | 0.031 | 138758302 | 138656877 | tier2 | In-frame | 2936 | NA | 0.35101 |
| OV | TCGA-13-0905-01B | TCGA-13-0905 | CAT|CD3D | CAT | CD3D | 11 | 11 | 1 | -1 | 22 | 20 | 16 | 0.24 | 34460626 | 118210209 | tier1 | Out-of-frame | 3037 | NA | 0.36052 |
| OV | TCGA-04-1517-01A | TCGA-04-1517 | CCDC6|ANK3 | CCDC6 | ANK3 | 10 | 10 | -1 | -1 | 154 | 42 | 39 | 0.072 | 61665880 | 61789584 | tier1 | CDS-3UTR | 3150 | NA | 0.37389 |
| OV | TCGA-13-0760-01A | TCGA-13-0760 | CCDC6|ANK3 | CCDC6 | ANK3 | 10 | 10 | -1 | -1 | 5 | 23 | 17 | 0.072 | 61665880 | 61827767 | tier1 | Out-of-frame | 3151 | NA | 0.37389 |
| OV | TCGA-24-2033-01A | TCGA-24-2033 | CCDC6|ANK3 | CCDC6 | ANK3 | 10 | 10 | -1 | -1 | 6 | 59 | 57 | 0.072 | 61665880 | 61802514 | tier1 | In-frame | 3152 | NA | 0.37389 |
| OV | TCGA-61-1914-01A | TCGA-61-1914 | CCDC6|ANK3 | CCDC6 | ANK3 | 10 | 10 | -1 | -1 | 13 | 24 | 19 | 0.072 | 61665880 | 61802517 | tier1 | In-frame | 3153 | NA | 0.37389 |
| OV | TCGA-13-0768-01A | TCGA-13-0768 | CHERP|CPAMD8 | CHERP | CPAMD8 | 19 | 19 | -1 | -1 | 3 | 4 | 4 | 0.073 | 16652681 | 17017927 | tier1 | Out-of-frame | 3661 | NA | 0.36115 |
| OV | TCGA-WR-A838-01A | TCGA-WR-A838 | CIAO1|TMEM127 | CIAO1 | TMEM127 | 2 | 2 | 1 | -1 | 13 | 104 | 95 | 0.065 | 96932227 | 96920735 | tier1 | In-frame | 3727 | NA | 0.35837 |
| OV | TCGA-VG-A8LO-01A | TCGA-VG-A8LO | CLDN7|C17orf61 | CLDN7 | C17orf61 | 17 | 17 | -1 | -1 | 21 | 54 | 50 | 0.41 | 7165140 | 7307008 | tier1 | In-frame | 3774 | NA | 0 |
| OV | TCGA-24-1557-01A | TCGA-24-1557 | CSMD2|FYB | CSMD2 | FYB | 1 | 5 | -1 | -1 | 4 | 1 | 1 | 0.67 | 34291298 | 39153706 | tier2 | In-frame | 4272 | non-validated | 0.37521 |
| OV | TCGA-61-1728-01A | TCGA-61-1728 | DAB2IP|SLC44A4 | DAB2IP | SLC44A4 | 9 | 6 | 1 | -1 | 2 | 19 | 16 | 0.18 | 124533003 | 31837414 | tier2 | In-frame | 4534 | NA | 0.3737 |
| OV | TCGA-13-1477-01A | TCGA-13-1477 | DDR1|PAK1 | DDR1 | PAK1 | 6 | 11 | 1 | -1 | 17 | 15 | 14 | 1.9 | 30861200 | 77070062 | tier1 | In-frame | 4640 | validated | 0.38392 |
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