Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| MESO | TCGA-SC-A6LM-01A | TCGA-SC-A6LM | PLEKHG1|GJA1 | PLEKHG1 | GJA1 | 6 | 6 | 1 | 1 | 9 | 10 | 8 | 0.005 | 151089874 | 121767978 | tier1 | CDS-5UTR | 13022 | NA | 0.37627 |
| MESO | TCGA-UD-AABY-01A | TCGA-UD-AABY | PLXNB1|ITIH3 | PLXNB1 | ITIH3 | 3 | 3 | -1 | 1 | 13 | 8 | 7 | 0.005 | 48463083 | 52838742 | tier1 | Out-of-frame | 13069 | NA | 0.37503 |
| MESO | TCGA-TS-A7OU-01B | TCGA-TS-A7OU | PTPN3|ASTN2 | PTPN3 | ASTN2 | 9 | 9 | -1 | -1 | 2 | 2 | 2 | 1.5 | 112207520 | 119903757 | tier2 | In-frame | 13834 | NA | 0.37135 |
| MESO | TCGA-XT-AASU-01A | TCGA-XT-AASU | PVRL3|KCNMB3 | PVRL3 | KCNMB3 | 3 | 3 | 1 | -1 | 3 | 2 | 1 | 0.73 | 110866331 | 178968722 | tier2 | In-frame | 13976 | NA | 0 |
| MESO | TCGA-SH-A9CU-01A | TCGA-SH-A9CU | RNF111|MAPKAP1 | RNF111 | MAPKAP1 | 15 | 9 | 1 | -1 | 5 | 4 | 4 | 0.74 | 59280267 | 128348006 | tier1 | 5UTR-CDS | 14730 | NA | 0 |
| MESO | TCGA-UT-A88D-01B | TCGA-UT-A88D | STK39|SCN7A | STK39 | SCN7A | 2 | 2 | -1 | -1 | 3 | 3 | 3 | 3.4 | 168869144 | 167334220 | tier1 | CDS-5UTR | 17092 | NA | 0 |
| MESO | TCGA-TS-A8AY-01A | TCGA-TS-A8AY | TAF1B|SGCZ | TAF1B | SGCZ | 2 | 8 | 1 | -1 | 2 | 3 | 2 | 0.19 | 9985447 | 14412435 | tier3 | In-frame | 17321 | NA | 0 |
| MESO | TCGA-SH-A7BD-01A | TCGA-SH-A7BD | TNXB|DDR1 | TNXB | DDR1 | 6 | 6 | -1 | 1 | 2 | 5 | 5 | 0.56 | 32029174 | 30865156 | tier3 | Out-of-frame | 18420 | NA | 0 |
| MESO | TCGA-TS-A7OZ-01A | TCGA-TS-A7OZ | UNC5B|ADAP2 | UNC5B | ADAP2 | 10 | 17 | 1 | 1 | 4 | 3 | 3 | 0.2 | 73047522 | 29271925 | tier4 | Out-of-frame | 19252 | NA | 0 |
| MESO | TCGA-3H-AB3M-01A | TCGA-3H-AB3M | VCAN|GABRA5 | VCAN | GABRA5 | 5 | 15 | 1 | 1 | 60 | 40 | 39 | 0.42 | 82849341 | 27188362 | tier1 | In-frame | 19530 | NA | 0 |
| MESO | TCGA-SH-A7BC-01A | TCGA-SH-A7BC | VLDLR|SLC1A1 | VLDLR | SLC1A1 | 9 | 9 | 1 | 1 | 7 | 12 | 12 | 0.48 | 2622271 | 4544567 | tier1 | In-frame | 19585 | NA | 0 |
| OV | TCGA-24-1423-01A | TCGA-24-1423 | AAK1|C2orf42 | AAK1 | C2orf42 | 2 | 2 | -1 | -1 | 50 | 49 | 46 | 0.41 | 69783992 | 70377696 | tier1 | Out-of-frame | 9 | NA | 0 |
| OV | TCGA-24-2281-01A | TCGA-24-2281 | ACVR1|NFATC1 | ACVR1 | NFATC1 | 2 | 18 | -1 | 1 | 6 | 44 | 42 | 1.9 | 158674897 | 77246248 | tier1 | 5UTR-CDS | 393 | NA | 0.38243 |
| OV | TCGA-29-A5NZ-01A | TCGA-29-A5NZ | ADCY9|FAHD1 | ADCY9 | FAHD1 | 16 | 16 | -1 | 1 | 2 | 3 | 3 | 0.54 | 4163751 | 1888017 | tier4 | Out-of-frame | 475 | NA | 0.34608 |
| OV | TCGA-29-1693-01A | TCGA-29-1693 | ADD1|FAM193A | ADD1 | FAM193A | 4 | 4 | 1 | 1 | 3 | 11 | 11 | 0.067 | 2845751 | 2733502 | tier1 | 5UTR-CDS | 494 | NA | 0.36559 |
| OV | TCGA-04-1356-01A | TCGA-04-1356 | ADD1|SH3BP2 | ADD1 | SH3BP2 | 4 | 4 | 1 | 1 | 4 | 2 | 1 | 0.13 | 2845751 | 2822341 | tier2 | 5UTR-5UTR | 497 | NA | 0.38083 |
| OV | TCGA-24-1616-01A | TCGA-24-1616 | ADIPOR2|NINJ2 | ADIPOR2 | NINJ2 | 12 | 12 | 1 | -1 | 39 | 8 | 8 | 0.62 | 1800357 | 675344 | tier1 | 5UTR-CDS | 510 | NA | 0.34126 |
| OV | TCGA-29-1783-01A | TCGA-29-1783 | ADNP|KCNG1 | ADNP | KCNG1 | 20 | 20 | -1 | -1 | 14 | 13 | 11 | 1.7 | 49547363 | 49628953 | tier1 | 5UTR-5UTR | 527 | NA | 0.35853 |
| OV | TCGA-25-1315-01A | TCGA-25-1315 | ANKRD13C|OR5V1 | ANKRD13C | OR5V1 | 1 | 6 | -1 | -1 | 2 | 1 | 1 | 0.18 | 70766447 | 29324054 | tier2 | CDS-5UTR | 965 | NA | 0.35687 |
| OV | TCGA-OY-A56P-01A | TCGA-OY-A56P | ANO6|PKP2 | ANO6 | PKP2 | 12 | 12 | 1 | -1 | 2 | 13 | 11 | 0.92 | 45771896 | 32955490 | tier3 | Out-of-frame | 1037 | NA | 0.36718 |
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