Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| MESO | TCGA-UT-A88C-01B | TCGA-UT-A88C | C3orf64|SYNPR | C3orf64 | SYNPR | 3 | 3 | -1 | 1 | 2 | 1 | 1 | 0.46 | 69047162 | 63466508 | tier2 | In-frame | 2716 | NA | 0 |
| MESO | TCGA-TS-A7P3-01A | TCGA-TS-A7P3 | CLDND1|ARPP21 | CLDND1 | ARPP21 | 3 | 3 | -1 | 1 | 3 | 14 | 14 | 4.2 | 98241693 | 35721279 | tier1 | 5UTR-5UTR | 3775 | NA | 0.32829 |
| MESO | TCGA-LK-A4O0-01A | TCGA-LK-A4O0 | CRIM1|AFF3 | CRIM1 | AFF3 | 2 | 2 | 1 | -1 | 2 | 3 | 3 | 0.04 | 36669878 | 100368763 | tier2 | Out-of-frame | 4219 | NA | 0.35331 |
| MESO | TCGA-YS-A95C-01A | TCGA-YS-A95C | CTNNB1|DOCK3 | CTNNB1 | DOCK3 | 3 | 3 | 1 | 1 | 4 | 7 | 6 | 1.1 | 41280845 | 50927457 | tier1 | 3UTR-CDS | 4359 | NA | 0.38235 |
| MESO | TCGA-UD-AABY-01A | TCGA-UD-AABY | GLT8D1|PLXNB1 | GLT8D1 | PLXNB1 | 3 | 3 | -1 | -1 | 7 | 7 | 5 | 0.6 | 52729206 | 48445997 | tier1 | Out-of-frame | 7126 | NA | 0.37513 |
| MESO | TCGA-ZN-A9VO-01A | TCGA-ZN-A9VO | HLA-B|CFB | HLA-B | CFB | 6 | 6 | -1 | 1 | 4 | 1 | 1 | 0.061 | 31321649 | 31913427 | tier3 | NA | 7819 | NA | 0.37806 |
| MESO | TCGA-MQ-A4LI-01A | TCGA-MQ-A4LI | ITLN1|DCN | ITLN1 | DCN | 1 | 12 | -1 | -1 | 3 | 9 | 3 | 1.5 | 160846329 | 91539511 | tier1 | NA | 8417 | NA | 0.36781 |
| MESO | TCGA-ZN-A9VU-01A | TCGA-ZN-A9VU | ITLN1|NDUFV1 | ITLN1 | NDUFV1 | 1 | 11 | -1 | 1 | 2 | 7 | 3 | 0.23 | 160846329 | 67375697 | tier3 | NA | 8418 | NA | 0.35376 |
| MESO | TCGA-ZN-A9VW-01A | TCGA-ZN-A9VW | KLHL18|NUP210 | KLHL18 | NUP210 | 3 | 3 | 1 | -1 | 3 | 1 | 1 | 1.2 | 47324584 | 13441361 | tier2 | Out-of-frame | 9058 | NA | 0.36941 |
| MESO | TCGA-XT-AASU-01A | TCGA-XT-AASU | MICA|NCR3 | MICA | NCR3 | 6 | 6 | 1 | -1 | 304 | 31 | 25 | 0.3 | 31368540 | 31557676 | tier1 | 5UTR-CDS | 10340 | NA | 0.35353 |
| MESO | TCGA-LK-A4NZ-01A | TCGA-LK-A4NZ | MSLN|UVRAG | MSLN | UVRAG | 16 | 11 | 1 | 1 | 2 | 8 | 4 | 0.32 | 818865 | 75694431 | tier3 | 3UTR-CDS | 10740 | NA | 0.34468 |
| MESO | TCGA-LK-A4O5-01A | TCGA-LK-A4O5 | MTAP|LINGO2 | MTAP | LINGO2 | 9 | 9 | 1 | -1 | 13 | 5 | 4 | 0.19 | 21854869 | 28476023 | tier1 | CDS-5UTR | 10771 | NA | 0.33836 |
| MESO | TCGA-MQ-A4KX-01A | TCGA-MQ-A4KX | MYO6|CRYL1 | MYO6 | CRYL1 | 6 | 13 | 1 | -1 | 3 | 13 | 12 | 0.04 | 76459140 | 20987526 | tier1 | 5UTR-CDS | 10997 | NA | 0.3764 |
| MESO | TCGA-LK-A4O7-01A | TCGA-LK-A4O7 | NF2|PIAS1 | NF2 | PIAS1 | 22 | 15 | 1 | 1 | 9 | 5 | 4 | 2.2 | 30000101 | 68378644 | tier1 | In-frame | 11423 | NA | 0.38598 |
| MESO | TCGA-TS-A8AI-01A | TCGA-TS-A8AI | NLGN1|CCDC50 | NLGN1 | CCDC50 | 3 | 3 | 1 | 1 | 3 | 3 | 3 | 0.005 | 173525622 | 191074877 | tier1 | In-frame | 11593 | NA | 0.35406 |
| MESO | TCGA-TS-A7P1-01A | TCGA-TS-A7P1 | NRG1|PROSC | NRG1 | PROSC | 8 | 8 | 1 | 1 | 5 | 1 | 1 | 3.5 | 32406344 | 37630273 | tier2 | In-frame | 11747 | NA | 0.37951 |
| MESO | TCGA-TS-A7OZ-01A | TCGA-TS-A7OZ | NRIP1|IGSF8 | NRIP1 | IGSF8 | 21 | 1 | -1 | -1 | 12 | 17 | 14 | 0.65 | 16386665 | 160062485 | tier4 | 5UTR-CDS | 11754 | NA | 0.36459 |
| MESO | TCGA-ZN-A9VQ-01A | TCGA-ZN-A9VQ | NT5C2|LRIT1 | NT5C2 | LRIT1 | 10 | 10 | -1 | -1 | 31 | 40 | 33 | 5.1 | 104899163 | 85994134 | tier1 | In-frame | 11818 | NA | 0.35355 |
| MESO | TCGA-LK-A4NY-01A | TCGA-LK-A4NY | ODZ2|RALGPS1 | ODZ2 | RALGPS1 | 5 | 9 | 1 | 1 | 3 | 4 | 4 | 0.61 | 167420187 | 129972974 | tier1 | Out-of-frame | 12008 | NA | 0.36455 |
| MESO | TCGA-UD-AAC4-01A | TCGA-UD-AAC4 | OSCP1|NF1 | OSCP1 | NF1 | 1 | 17 | -1 | 1 | 26 | 11 | 9 | 0.053 | 36915859 | 29701031 | tier2 | In-frame | 12101 | NA | 0.37002 |
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