Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-56-A4BW-01A | TCGA-56-A4BW | UBE4B|PDPN | UBE4B | PDPN | 1 | 1 | 1 | 1 | 8 | 4 | 4 | 2.1 | 10228328 | 13933668 | tier1 | Out-of-frame | 19114 | NA | 0 |
| LUSC | TCGA-22-5473-01A | TCGA-22-5473 | UHRF1BP1L|ANKS1B | UHRF1BP1L | ANKS1B | 12 | 12 | -1 | -1 | 3 | 4 | 4 | 2.5 | 100480053 | 99548173 | tier1 | In-frame | 19208 | NA | 0 |
| LUSC | TCGA-43-A56U-01A | TCGA-43-A56U | USP10|CDH13 | USP10 | CDH13 | 16 | 16 | 1 | 1 | 24 | 32 | 28 | 0.27 | 84767109 | 83781713 | tier4 | NA | 19302 | NA | 0 |
| LUSC | TCGA-22-5481-01A | TCGA-22-5481 | USP32|EPHA1 | USP32 | EPHA1 | 17 | 7 | -1 | -1 | 7 | 7 | 5 | 2.9 | 58469243 | 143094750 | tier1 | In-frame | 19352 | NA | 0 |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | USP39|GGCX | USP39 | GGCX | 2 | 2 | 1 | -1 | 2 | 2 | 2 | 0.25 | 85868241 | 85786198 | tier3 | Out-of-frame | 19382 | NA | 0 |
| LUSC | TCGA-56-A4BX-01A | TCGA-56-A4BX | VPS8|NLGN1 | VPS8 | NLGN1 | 3 | 3 | 1 | 1 | 31 | 17 | 14 | 1.5 | 184742177 | 173322069 | tier1 | CDS-5UTR | 19678 | NA | 0 |
| LUSC | TCGA-66-2759-01A | TCGA-66-2759 | WASF2|FGR | WASF2 | FGR | 1 | 1 | -1 | -1 | 45 | 4 | 4 | 0.55 | 27816497 | 27951662 | tier1 | 5UTR-5UTR | 19730 | non-validated | 0 |
| LUSC | TCGA-85-8580-01A | TCGA-85-8580 | ZC3H3|SCRIB | ZC3H3 | SCRIB | 8 | 8 | -1 | -1 | 20 | 7 | 2 | 0.05 | 144547887 | 144889183 | tier1 | In-frame | 20142 | NA | 0 |
| LUSC | TCGA-22-5489-01A | TCGA-22-5489 | ZCCHC7|LRRC19 | ZCCHC7 | LRRC19 | 9 | 9 | 1 | -1 | 18 | 29 | 26 | 0.096 | 37126939 | 26995847 | tier2 | In-frame | 20170 | NA | 0 |
| LUSC | TCGA-60-2712-01A | TCGA-60-2712 | ZNF200|COLEC12 | ZNF200 | COLEC12 | 16 | 18 | -1 | -1 | 7 | 4 | 4 | 1.3 | 3282421 | 480757 | tier1 | In-frame | 20395 | NA | 0 |
| LUSC | TCGA-34-5241-01A | TCGA-34-5241 | ZNF430|GABRB1 | ZNF430 | GABRB1 | 19 | 4 | 1 | 1 | 2 | 4 | 4 | 3.6 | 21216990 | 47033931 | tier3 | Out-of-frame | 20500 | NA | 0 |
| LUSC | TCGA-43-7657-01A | TCGA-43-7657 | ZNF599|SCN1B | ZNF599 | SCN1B | 19 | 19 | -1 | 1 | 2 | 4 | 3 | 1.9 | 35258221 | 35523432 | tier2 | In-frame | 20582 | NA | 0 |
| LUSC | TCGA-37-A5EN-01A | TCGA-37-A5EN | ZNF653|PDE4A | ZNF653 | PDE4A | 19 | 19 | -1 | 1 | 2 | 1 | 1 | 0.003 | 11609111 | 10527560 | tier2 | NA | 20611 | NA | 0 |
| LUSC | TCGA-60-2706-01A | TCGA-60-2706 | ZNF704|PAG1 | ZNF704 | PAG1 | 8 | 8 | -1 | -1 | 6 | 1 | 1 | 0.19 | 81599461 | 81905542 | tier4 | CDS-5UTR | 20635 | NA | 0 |
| LUSC | TCGA-43-6143-01A | TCGA-43-6143 | ZNRF3|MED15 | ZNRF3 | MED15 | 22 | 22 | 1 | 1 | 17 | 6 | 6 | 0.006 | 29280054 | 20891404 | tier1 | Out-of-frame | 20703 | NA | 0 |
| LUSC | TCGA-46-6026-01A | TCGA-46-6026 | ZSWIM4|SLC1A6 | ZSWIM4 | SLC1A6 | 19 | 19 | 1 | -1 | 5 | 4 | 4 | 0.28 | 13910735 | 15083729 | tier1 | Out-of-frame | 20719 | NA | 0 |
| MESO | TCGA-UD-AAC4-01A | TCGA-UD-AAC4 | ANKS1B|PTPRQ | ANKS1B | PTPRQ | 12 | 12 | -1 | 1 | 2 | 3 | 2 | 0.29 | 100377882 | 80981908 | tier2 | 5UTR-CDS | 1006 | NA | 0.37119 |
| MESO | TCGA-3U-A98D-01A | TCGA-3U-A98D | ATP11A|COL14A1 | ATP11A | COL14A1 | 13 | 8 | 1 | 1 | 9 | 15 | 13 | 0.59 | 113344769 | 121160045 | tier1 | CDS-5UTR | 1668 | NA | 0.36573 |
| MESO | TCGA-UD-AABY-01A | TCGA-UD-AABY | BAP1|PLXNB1 | BAP1 | PLXNB1 | 3 | 3 | -1 | -1 | 7 | 2 | 2 | 1 | 52437154 | 48455480 | tier1 | In-frame | 1925 | NA | 0.3779 |
| MESO | TCGA-TS-A7OZ-01A | TCGA-TS-A7OZ | C21orf63|TCP10L | C21orf63 | TCP10L | 21 | 21 | 1 | -1 | 3 | 5 | 4 | 0.02 | 33785321 | 33954725 | tier1 | Out-of-frame | 2662 | NA | 0 |
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