Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-98-A53C-01A | TCGA-98-A53C | TMCO3|SPACA7 | TMCO3 | SPACA7 | 13 | 13 | 1 | 1 | 28 | 16 | 14 | 0.086 | 114164739 | 113047335 | tier1 | In-frame | 17906 | NA | 0 |
| LUSC | TCGA-98-A53A-01A | TCGA-98-A53A | TMEM104|PCYT2 | TMEM104 | PCYT2 | 17 | 17 | 1 | -1 | 42 | 16 | 15 | 0.013 | 72781742 | 79867478 | tier1 | CDS-5UTR | 17924 | NA | 0 |
| LUSC | TCGA-43-8116-01A | TCGA-43-8116 | TMEM117|TTC33 | TMEM117 | TTC33 | 12 | 5 | 1 | -1 | 6 | 1 | 1 | 0.26 | 44238731 | 40716600 | tier3 | Out-of-frame | 17941 | NA | 0 |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | TMEM25|CD3G | TMEM25 | CD3G | 11 | 11 | 1 | 1 | 33 | 18 | 17 | 3 | 118404844 | 118220458 | tier1 | In-frame | 18015 | NA | 0 |
| LUSC | TCGA-22-5491-01A | TCGA-22-5491 | TMEM30A|FILIP1 | TMEM30A | FILIP1 | 6 | 6 | -1 | -1 | 30 | 7 | 4 | 0.062 | 75994118 | 76005666 | tier1 | Out-of-frame | 18018 | NA | 0 |
| LUSC | TCGA-66-2758-01A | TCGA-66-2758 | TMEM87A|PTPRN2 | TMEM87A | PTPRN2 | 15 | 7 | -1 | -1 | 4 | 3 | 2 | 1.8 | 42565453 | 158109624 | tier1 | Out-of-frame | 18054 | NA | 0 |
| LUSC | TCGA-85-A511-01A | TCGA-85-A511 | TMEM87B|MERTK | TMEM87B | MERTK | 2 | 2 | 1 | 1 | 18 | 8 | 8 | 0.21 | 112813333 | 112751828 | tier1 | In-frame | 18057 | NA | 0 |
| LUSC | TCGA-21-1083-01A | TCGA-21-1083 | TMX3|METTL4 | TMX3 | METTL4 | 18 | 18 | -1 | -1 | 75 | 42 | 40 | 0.63 | 66378601 | 2567653 | tier1 | CDS-5UTR | 18325 | non-validated | 0 |
| LUSC | TCGA-33-AASI-01A | TCGA-33-AASI | TNS4|CCR7 | TNS4 | CCR7 | 17 | 17 | -1 | -1 | 145 | 112 | 5 | 1.1 | 38640736 | 38715194 | tier1 | In-frame | 18418 | NA | 0 |
| LUSC | TCGA-6A-AB49-01A | TCGA-6A-AB49 | TOP1|SLC2A10 | TOP1 | SLC2A10 | 20 | 20 | 1 | 1 | 5 | 6 | 5 | 0.58 | 39746936 | 45362395 | tier1 | Out-of-frame | 18445 | NA | 0 |
| LUSC | TCGA-77-8009-01A | TCGA-77-8009 | TPCN2|TMEM179B | TPCN2 | TMEM179B | 11 | 11 | 1 | 1 | 24 | 39 | 36 | 0.041 | 68816574 | 62556495 | tier1 | Out-of-frame | 18481 | NA | 0 |
| LUSC | TCGA-85-8580-01A | TCGA-85-8580 | TRAF3IP2|FYN | TRAF3IP2 | FYN | 6 | 6 | -1 | -1 | 2 | 1 | 1 | 2.3 | 111926979 | 111995833 | tier3 | 5UTR-CDS | 18553 | NA | 0 |
| LUSC | TCGA-52-7809-01A | TCGA-52-7809 | TRIM33|CSMD2 | TRIM33 | CSMD2 | 1 | 1 | -1 | -1 | 14 | 4 | 3 | 1.2 | 114948032 | 34128692 | tier1 | In-frame | 18634 | NA | 0 |
| LUSC | TCGA-85-6175-01A | TCGA-85-6175 | TSC22D2|ADCY5 | TSC22D2 | ADCY5 | 3 | 3 | 1 | -1 | 6 | 3 | 2 | 0.36 | 150129095 | 123071428 | tier1 | Out-of-frame | 18756 | NA | 0 |
| LUSC | TCGA-63-A5MW-01A | TCGA-63-A5MW | TSPAN9|TTC38 | TSPAN9 | TTC38 | 12 | 22 | 1 | 1 | 23 | 9 | 9 | 0.4 | 3192885 | 46688688 | tier1 | 5UTR-CDS | 18818 | NA | 0 |
| LUSC | TCGA-77-8154-01A | TCGA-77-8154 | TTC7B|RUNX1 | TTC7B | RUNX1 | 14 | 21 | -1 | -1 | 2 | 2 | 2 | 0.9 | 91110392 | 36265260 | tier2 | Out-of-frame | 18892 | NA | 0 |
| LUSC | TCGA-34-8456-01A | TCGA-34-8456 | TULP3|GGNBP2 | TULP3 | GGNBP2 | 12 | 17 | 1 | 1 | 5 | 8 | 8 | 1.1 | 3043727 | 34937774 | tier1 | In-frame | 18960 | NA | 0 |
| LUSC | TCGA-85-8353-01A | TCGA-85-8353 | TYMS|YES1 | TYMS | YES1 | 18 | 18 | 1 | -1 | 111 | 82 | 75 | 3.4 | 662320 | 732965 | tier1 | In-frame | 19003 | NA | 0 |
| LUSC | TCGA-XC-AA0X-01A | TCGA-XC-AA0X | UBA6|TMPRSS11D | UBA6 | TMPRSS11D | 4 | 4 | -1 | -1 | 3 | 3 | 1 | 2.3 | 68494789 | 68725396 | tier3 | Out-of-frame | 19030 | NA | 0 |
| LUSC | TCGA-66-2771-01A | TCGA-66-2771 | UBE2D3|SLC9B1 | UBE2D3 | SLC9B1 | 4 | 4 | -1 | -1 | 2 | 2 | 1 | 0.27 | 103789872 | 103832694 | tier3 | Out-of-frame | 19061 | NA | 0 |
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