Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-77-8007-01A | TCGA-77-8007 | SUPT5H|ACVRL1 | SUPT5H | ACVRL1 | 19 | 12 | 1 | 1 | 2 | 6 | 5 | 0.16 | 39967306 | 52306155 | tier3 | 3UTR-5UTR | 17188 | NA | 0 |
| LUSC | TCGA-66-2766-01A | TCGA-66-2766 | SUV420H1|SLITRK4 | SUV420H1 | SLITRK4 | 11 | X | -1 | -1 | 3 | 1 | 1 | 0.042 | 67980944 | 142718974 | tier4 | 5UTR-5UTR | 17210 | non-validated | 0 |
| LUSC | TCGA-66-2759-01A | TCGA-66-2759 | SYMPK|ZNF573 | SYMPK | ZNF573 | 19 | 19 | -1 | -1 | 19 | 22 | 19 | 1.3 | 46330768 | 38231095 | tier1 | Out-of-frame | 17236 | validated | 0 |
| LUSC | TCGA-43-A475-01A | TCGA-43-A475 | SYNRG|ROBO1 | SYNRG | ROBO1 | 17 | 3 | -1 | -1 | 2 | 2 | 2 | 0.63 | 35956270 | 78988077 | tier2 | Out-of-frame | 17264 | NA | 0 |
| LUSC | TCGA-39-5011-01A | TCGA-39-5011 | SYPL1|TMEM168 | SYPL1 | TMEM168 | 7 | 7 | -1 | -1 | 206 | 132 | 125 | 1.1 | 105738136 | 112407799 | tier1 | Out-of-frame | 17267 | NA | 0 |
| LUSC | TCGA-43-A475-01A | TCGA-43-A475 | TAF8|SLC22A16 | TAF8 | SLC22A16 | 6 | 6 | 1 | -1 | 298 | 189 | 159 | 1.6 | 42023752 | 110763978 | tier1 | Out-of-frame | 17354 | NA | 0 |
| LUSC | TCGA-43-2581-01A | TCGA-43-2581 | TANC2|PRKCA | TANC2 | PRKCA | 17 | 17 | 1 | 1 | 12 | 9 | 8 | 0.68 | 61151375 | 64683229 | tier4 | In-frame | 17380 | NA | 0 |
| LUSC | TCGA-56-6545-01A | TCGA-56-6545 | TANK|SLC38A6 | TANK | SLC38A6 | 2 | 14 | 1 | 1 | 8 | 12 | 11 | 0.47 | 162036272 | 61449226 | tier1 | In-frame | 17389 | NA | 0 |
| LUSC | TCGA-56-8305-01A | TCGA-56-8305 | TBCK|SLC9B2 | TBCK | SLC9B2 | 4 | 4 | -1 | -1 | 7 | 1 | 1 | 0.014 | 107216251 | 103947748 | tier2 | Out-of-frame | 17529 | NA | 0 |
| LUSC | TCGA-43-5668-01A | TCGA-43-5668 | TC2N|LPP | TC2N | LPP | 14 | 3 | -1 | 1 | 104 | 87 | 81 | 0.079 | 92280047 | 188583988 | tier2 | Out-of-frame | 17571 | NA | 0 |
| LUSC | TCGA-43-7658-01A | TCGA-43-7658 | TECR|PKN1 | TECR | PKN1 | 19 | 19 | 1 | 1 | 179 | 153 | 146 | 0.037 | 14640523 | 14574479 | tier1 | In-frame | 17651 | NA | 0 |
| LUSC | TCGA-56-A4ZK-01A | TCGA-56-A4ZK | TFDP1|LAMP1 | TFDP1 | LAMP1 | 13 | 13 | 1 | 1 | 135 | 238 | 218 | 0.23 | 114240164 | 113973784 | tier1 | Out-of-frame | 17700 | NA | 0 |
| LUSC | TCGA-22-5474-01A | TCGA-22-5474 | TFRC|CPA3 | TFRC | CPA3 | 3 | 3 | -1 | 1 | 53 | 32 | 32 | 1.1 | 195787051 | 148614307 | tier1 | Out-of-frame | 17727 | NA | 0 |
| LUSC | TCGA-63-A5MP-01A | TCGA-63-A5MP | THAP7|NRG1 | THAP7 | NRG1 | 22 | 8 | -1 | 1 | 9 | 7 | 1 | 0.47 | 21354936 | 32453346 | tier2 | Out-of-frame | 17763 | NA | 0 |
| LUSC | TCGA-85-8353-01A | TCGA-85-8353 | TJAP1|ABCC10 | TJAP1 | ABCC10 | 6 | 6 | 1 | 1 | 21 | 20 | 18 | 0.049 | 43446456 | 43409600 | tier1 | 5UTR-CDS | 17838 | NA | 0 |
| LUSC | TCGA-96-A4JK-01A | TCGA-96-A4JK | TJP2|STX17 | TJP2 | STX17 | 9 | 9 | 1 | 1 | 6 | 1 | 1 | 1.6 | 71766687 | 102677460 | tier2 | 5UTR-5UTR | 17845 | NA | 0 |
| LUSC | TCGA-66-2766-01A | TCGA-66-2766 | TJP3|LRRC8E | TJP3 | LRRC8E | 19 | 19 | 1 | 1 | 5 | 2 | 2 | 0.4 | 3721908 | 7960484 | tier1 | 5UTR-5UTR | 17847 | non-validated | 0 |
| LUSC | TCGA-66-2789-01A | TCGA-66-2789 | TM9SF4|HM13 | TM9SF4 | HM13 | 20 | 20 | 1 | 1 | 84 | 55 | 49 | 0.074 | 30747914 | 30154013 | tier1 | In-frame | 17879 | non-validated | 0 |
| LUSC | TCGA-39-5019-01A | TCGA-39-5019 | TMCC1|LSAMP | TMCC1 | LSAMP | 3 | 3 | -1 | -1 | 5 | 8 | 5 | 0.37 | 129546646 | 115805403 | tier1 | Out-of-frame | 17897 | NA | 0 |
| LUSC | TCGA-NC-A5HN-01A | TCGA-NC-A5HN | TMCC1|QSOX2 | TMCC1 | QSOX2 | 3 | 9 | -1 | -1 | 8 | 4 | 4 | 0.97 | 129546646 | 139116755 | tier1 | In-frame | 17898 | NA | 0 |
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