Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 192 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-98-8021-01A | TCGA-98-8021 | SLC24A3|MACROD2 | SLC24A3 | MACROD2 | 20 | 20 | 1 | 1 | 5 | 6 | 5 | 0.69 | 19566188 | 15843390 | tier1 | In-frame | 16081 | NA | 0 |
| LUSC | TCGA-77-8144-01A | TCGA-77-8144 | SLC25A13|MAGI2 | SLC25A13 | MAGI2 | 7 | 7 | -1 | -1 | 6 | 9 | 8 | 0.018 | 95814239 | 77998530 | tier1 | In-frame | 16089 | NA | 0 |
| LUSC | TCGA-O2-A52Q-01A | TCGA-O2-A52Q | SLC25A44|SEMA4A | SLC25A44 | SEMA4A | 1 | 1 | 1 | 1 | 32 | 12 | 9 | 0.01 | 156164038 | 156142617 | tier1 | 5UTR-CDS | 16119 | NA | 0 |
| LUSC | TCGA-85-8664-01A | TCGA-85-8664 | SLC2A10|ACSS2 | SLC2A10 | ACSS2 | 20 | 20 | 1 | 1 | 11 | 7 | 7 | 0.48 | 45338379 | 33500899 | tier1 | Out-of-frame | 16127 | NA | 0 |
| LUSC | TCGA-NC-A5HL-01A | TCGA-NC-A5HL | SLC39A14|PIWIL2 | SLC39A14 | PIWIL2 | 8 | 8 | 1 | 1 | 6 | 1 | 1 | 0.24 | 22269719 | 22161534 | tier3 | Out-of-frame | 16203 | NA | 0 |
| LUSC | TCGA-37-A5EN-01A | TCGA-37-A5EN | SLC44A3|ABCD3 | SLC44A3 | ABCD3 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.3 | 95332973 | 94940699 | tier2 | In-frame | 16232 | NA | 0 |
| LUSC | TCGA-21-1071-01A | TCGA-21-1071 | SLC47A2|FADS2 | SLC47A2 | FADS2 | 17 | 11 | -1 | 1 | 4 | 5 | 5 | 0.29 | 19605918 | 61624483 | tier4 | In-frame | 16267 | NA | 0 |
| LUSC | TCGA-22-4604-01A | TCGA-22-4604 | SLC9A9|KCNAB1 | SLC9A9 | KCNAB1 | 3 | 3 | -1 | 1 | 4 | 4 | 4 | 0.043 | 143513843 | 156139405 | tier1 | In-frame | 16306 | NA | 0 |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | SLCO2A1|RYK | SLCO2A1 | RYK | 3 | 3 | -1 | -1 | 2 | 4 | 4 | 0.43 | 133748551 | 133907767 | tier4 | Out-of-frame | 16308 | NA | 0 |
| LUSC | TCGA-22-5485-01A | TCGA-22-5485 | SLCO3A1|BMPR2 | SLCO3A1 | BMPR2 | 15 | 2 | 1 | 1 | 31 | 25 | 22 | 0.17 | 92397318 | 203407034 | tier4 | Out-of-frame | 16312 | validated | 0 |
| LUSC | TCGA-21-1083-01A | TCGA-21-1083 | SMAD2|CD226 | SMAD2 | CD226 | 18 | 18 | -1 | -1 | 15 | 14 | 13 | 0.047 | 45456732 | 67563281 | tier1 | 5UTR-CDS | 16334 | non-validated | 0 |
| LUSC | TCGA-63-A5MP-01A | TCGA-63-A5MP | SMAD4|NRG1 | SMAD4 | NRG1 | 18 | 8 | 1 | 1 | 16 | 12 | 11 | 0.98 | 48556993 | 32585467 | tier1 | 5UTR-CDS | 16347 | NA | 0 |
| LUSC | TCGA-NC-A5HL-01A | TCGA-NC-A5HL | SMAGP|NELL2 | SMAGP | NELL2 | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 0.14 | 51664040 | 45269683 | tier3 | 5UTR-CDS | 16356 | NA | 0 |
| LUSC | TCGA-NC-A5HT-01A | TCGA-NC-A5HT | SMO|TSPAN33 | SMO | TSPAN33 | 7 | 7 | 1 | 1 | 7 | 4 | 2 | 0.25 | 128829323 | 128801520 | tier1 | Out-of-frame | 16428 | NA | 0 |
| LUSC | TCGA-22-5473-01A | TCGA-22-5473 | SNX15|NAALADL1 | SNX15 | NAALADL1 | 11 | 11 | 1 | -1 | 4 | 1 | 1 | 0.19 | 64795108 | 64822210 | tier4 | In-frame | 16535 | NA | 0 |
| LUSC | TCGA-22-4591-01A | TCGA-22-4591 | SPATA18|EXOC1 | SPATA18 | EXOC1 | 4 | 4 | 1 | 1 | 3 | 5 | 5 | 0.046 | 52917957 | 56768510 | tier1 | In-frame | 16671 | NA | 0 |
| LUSC | TCGA-85-8352-01A | TCGA-85-8352 | SRPK2|LRP5 | SRPK2 | LRP5 | 7 | 11 | -1 | 1 | 53 | 51 | 46 | 2.4 | 105029095 | 68213904 | tier1 | Out-of-frame | 16876 | NA | 0 |
| LUSC | TCGA-LA-A7SW-01A | TCGA-LA-A7SW | ST6GALNAC3|AK5 | ST6GALNAC3 | AK5 | 1 | 1 | 1 | 1 | 5 | 5 | 4 | 0.006 | 76540569 | 77949002 | tier1 | In-frame | 16953 | NA | 0 |
| LUSC | TCGA-66-2766-01A | TCGA-66-2766 | STIM1|VHL | STIM1 | VHL | 11 | 3 | 1 | 1 | 14 | 2 | 2 | 1.9 | 3877639 | 10191471 | tier1 | In-frame | 17042 | non-validated | 0 |
| LUSC | TCGA-34-A5IX-01A | TCGA-34-A5IX | STX6|TNR | STX6 | TNR | 1 | 1 | -1 | -1 | 4 | 5 | 4 | 0.27 | 180971742 | 175375913 | tier1 | CDS-5UTR | 17140 | NA | 0 |
|
Showing page 192 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.