Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-85-A50M-01A | TCGA-85-A50M | S100A6|PLEKHB2 | S100A6 | PLEKHB2 | 1 | 2 | -1 | 1 | 2 | 179 | 147 | 1.3 | 153507075 | 131876464 | tier3 | 3UTR-5UTR | 15239 | NA | 0 |
| LUSC | TCGA-56-6545-01A | TCGA-56-6545 | SCAF11|ADCY8 | SCAF11 | ADCY8 | 12 | 8 | -1 | -1 | 5 | 4 | 4 | 3.9 | 46342220 | 131826473 | tier1 | Out-of-frame | 15363 | NA | 0 |
| LUSC | TCGA-NC-A5HK-01A | TCGA-NC-A5HK | SEC16A|NOTCH1 | SEC16A | NOTCH1 | 9 | 9 | -1 | -1 | 11 | 1 | 1 | 0.069 | 139353586 | 139418431 | tier2 | Out-of-frame | 15498 | NA | 0 |
| LUSC | TCGA-22-5492-01A | TCGA-22-5492 | SEMA3C|CD36 | SEMA3C | CD36 | 7 | 7 | -1 | 1 | 15 | 4 | 4 | 0.44 | 80545995 | 80115783 | tier1 | CDS-5UTR | 15543 | non-validated | 0 |
| LUSC | TCGA-77-A5G7-01B | TCGA-77-A5G7 | SEMA3D|KCNU1 | SEMA3D | KCNU1 | 7 | 8 | -1 | 1 | 5 | 1 | 1 | 0.24 | 84727121 | 36721922 | tier2 | Out-of-frame | 15546 | NA | 0 |
| LUSC | TCGA-66-2793-01A | TCGA-66-2793 | SEMA4C|FAM178B | SEMA4C | FAM178B | 2 | 2 | -1 | -1 | 23 | 13 | 13 | 0.36 | 97527316 | 97568444 | tier1 | Out-of-frame | 15560 | non-validated | 0 |
| LUSC | TCGA-33-4566-01A | TCGA-33-4566 | SERINC2|ZCCHC17 | SERINC2 | ZCCHC17 | 1 | 1 | 1 | 1 | 7 | 1 | 1 | 0.038 | 31886151 | 31836879 | tier2 | In-frame | 15634 | NA | 0 |
| LUSC | TCGA-66-2758-01A | TCGA-66-2758 | SERINC2|ZCCHC17 | SERINC2 | ZCCHC17 | 1 | 1 | 1 | 1 | 85 | 31 | 23 | 0.038 | 31901915 | 31836879 | tier1 | Out-of-frame | 15636 | NA | 0 |
| LUSC | TCGA-77-7142-01A | TCGA-77-7142 | SERINC5|THBS4 | SERINC5 | THBS4 | 5 | 5 | -1 | 1 | 121 | 80 | 69 | 0.77 | 79470777 | 79372678 | tier1 | In-frame | 15644 | NA | 0 |
| LUSC | TCGA-43-A56U-01A | TCGA-43-A56U | SF1|EHD1 | SF1 | EHD1 | 11 | 11 | -1 | -1 | 13 | 7 | 7 | 0.56 | 64543970 | 64627808 | tier4 | In-frame | 15720 | NA | 0 |
| LUSC | TCGA-43-2576-01A | TCGA-43-2576 | SFT2D2|C1orf9 | SFT2D2 | C1orf9 | 1 | 1 | 1 | 1 | 172 | 249 | 222 | 0.84 | 168208398 | 172520652 | tier1 | In-frame | 15764 | NA | 0 |
| LUSC | TCGA-66-2787-01A | TCGA-66-2787 | SGCB|SPATA18 | SGCB | SPATA18 | 4 | 4 | -1 | 1 | 4 | 2 | 2 | 0.057 | 52899597 | 52926585 | tier1 | In-frame | 15773 | NA | 0 |
| LUSC | TCGA-85-A4QQ-01A | TCGA-85-A4QQ | SH3RF2|SLC23A1 | SH3RF2 | SLC23A1 | 5 | 5 | 1 | -1 | 2 | 1 | 1 | 1.6 | 145317869 | 138707942 | tier3 | Out-of-frame | 15844 | NA | 0 |
| LUSC | TCGA-22-1016-01A | TCGA-22-1016 | SLC12A8|BCAS1 | SLC12A8 | BCAS1 | 3 | 20 | -1 | -1 | 14 | 11 | 10 | 0.22 | 124854513 | 52591969 | tier1 | Out-of-frame | 16020 | validated | 0 |
| LUSC | TCGA-NC-A5HJ-01A | TCGA-NC-A5HJ | SLC1A1|SMARCA2 | SLC1A1 | SMARCA2 | 9 | 9 | 1 | 1 | 10 | 9 | 8 | 0.005 | 4490770 | 2096657 | tier1 | Out-of-frame | 16043 | NA | 0 |
| LUSC | TCGA-21-A5DI-01A | TCGA-21-A5DI | SLC1A3|CDH12 | SLC1A3 | CDH12 | 5 | 5 | 1 | -1 | 2 | 1 | 1 | 2.2 | 36608706 | 21765208 | tier3 | In-frame | 16045 | NA | 0 |
| LUSC | TCGA-92-8065-01A | TCGA-92-8065 | SLC1A3|MAPKAP1 | SLC1A3 | MAPKAP1 | 5 | 9 | 1 | -1 | 5 | 4 | 4 | 0.15 | 36608706 | 128420078 | tier1 | In-frame | 16046 | NA | 0 |
| LUSC | TCGA-60-2714-01A | TCGA-60-2714 | SLC20A2|FBXW7 | SLC20A2 | FBXW7 | 8 | 4 | -1 | -1 | 6 | 8 | 7 | 0.51 | 42358549 | 153247383 | tier1 | 5UTR-CDS | 16059 | NA | 0 |
| LUSC | TCGA-60-2708-01A | TCGA-60-2708 | SLC20A2|ZMAT4 | SLC20A2 | ZMAT4 | 8 | 8 | -1 | -1 | 58 | 39 | 37 | 0.32 | 42358549 | 40389757 | tier1 | 5UTR-CDS | 16062 | NA | 0 |
| LUSC | TCGA-21-1081-01A | TCGA-21-1081 | SLC22A23|TRAF3 | SLC22A23 | TRAF3 | 6 | 14 | -1 | 1 | 24 | 13 | 13 | 0.61 | 3410422 | 103336522 | tier1 | CDS-5UTR | 16074 | NA | 0 |
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