Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-77-A5G6-01A | TCGA-77-A5G6 | RAD51B|MARK3 | RAD51B | MARK3 | 14 | 14 | 1 | 1 | 11 | 10 | 9 | 0.34 | 68353921 | 103946724 | tier1 | In-frame | 14172 | NA | 0 |
| LUSC | TCGA-66-2754-01A | TCGA-66-2754 | RAD51D|SLCO6A1 | RAD51D | SLCO6A1 | 17 | 5 | -1 | -1 | 7 | 7 | 6 | 0.82 | 33433405 | 101748847 | tier1 | Out-of-frame | 14175 | NA | 0 |
| LUSC | TCGA-85-8354-01A | TCGA-85-8354 | RALA|C7orf10 | RALA | C7orf10 | 7 | 7 | 1 | 1 | 33 | 23 | 17 | 2.1 | 39663424 | 40789033 | tier1 | 5UTR-CDS | 14212 | NA | 0 |
| LUSC | TCGA-77-7142-01A | TCGA-77-7142 | RCOR1|LSAMP | RCOR1 | LSAMP | 14 | 3 | 1 | -1 | 5 | 4 | 3 | 4.3 | 103174920 | 115571464 | tier1 | Out-of-frame | 14515 | NA | 0 |
| LUSC | TCGA-68-8250-01A | TCGA-68-8250 | RELN|CHRM2 | RELN | CHRM2 | 7 | 7 | -1 | 1 | 5 | 5 | 3 | 0.7 | 103191514 | 136635750 | tier1 | CDS-5UTR | 14539 | non-validated | 0 |
| LUSC | TCGA-56-5898-01A | TCGA-56-5898 | RNASE10|CD38 | RNASE10 | CD38 | 14 | 4 | 1 | 1 | 2 | 2 | 2 | 0.95 | 20974178 | 15818134 | tier3 | Out-of-frame | 14716 | NA | 0 |
| LUSC | TCGA-63-5128-01A | TCGA-63-5128 | RNASEH2A|BEST2 | RNASEH2A | BEST2 | 19 | 19 | 1 | 1 | 41 | 19 | 14 | 0.31 | 12918320 | 12868465 | tier1 | Out-of-frame | 14721 | NA | 0 |
| LUSC | TCGA-70-6723-01A | TCGA-70-6723 | RNF121|PCDH9 | RNF121 | PCDH9 | 11 | 13 | 1 | -1 | 32 | 15 | 11 | 7.1 | 71671937 | 66879160 | tier1 | Out-of-frame | 14742 | NA | 0 |
| LUSC | TCGA-56-8629-01A | TCGA-56-8629 | RNF40|IL21R | RNF40 | IL21R | 16 | 16 | 1 | 1 | 17 | 4 | 4 | 0.25 | 30774880 | 27441377 | tier1 | CDS-5UTR | 14841 | NA | 0 |
| LUSC | TCGA-66-2781-01A | TCGA-66-2781 | ROBO1|MED12L | ROBO1 | MED12L | 3 | 3 | -1 | 1 | 2 | 4 | 4 | 0.068 | 78987751 | 150911277 | tier2 | Out-of-frame | 14868 | NA | 0 |
| LUSC | TCGA-56-6546-01A | TCGA-56-6546 | ROBO2|ERLIN2 | ROBO2 | ERLIN2 | 3 | 8 | 1 | 1 | 25 | 15 | 15 | 0.56 | 77147491 | 37607077 | tier1 | In-frame | 14872 | NA | 0 |
| LUSC | TCGA-LA-A7SW-01A | TCGA-LA-A7SW | ROCK1|CDH2 | ROCK1 | CDH2 | 18 | 18 | -1 | -1 | 44 | 42 | 41 | 1 | 18571137 | 25532323 | tier1 | Out-of-frame | 14881 | NA | 0 |
| LUSC | TCGA-NC-A5HQ-01A | TCGA-NC-A5HQ | RP11-762I7.5|VAMP8 | RP11-762I7.5 | VAMP8 | 12 | 2 | -1 | 1 | 42 | 20 | 18 | 0.015 | 56182859 | 85806132 | tier4 | NA | 14949 | NA | 0 |
| LUSC | TCGA-43-6770-01A | TCGA-43-6770 | RPAP3|ADAM32 | RPAP3 | ADAM32 | 12 | 8 | -1 | 1 | 34 | 31 | 29 | 0.75 | 48073276 | 39141105 | tier1 | Out-of-frame | 14969 | NA | 0 |
| LUSC | TCGA-58-8387-01A | TCGA-58-8387 | RPS19|CEACAM5 | RPS19 | CEACAM5 | 19 | 19 | 1 | 1 | 547 | 580 | 525 | 100 | 42365281 | 42231154 | tier1 | In-frame | 15036 | NA | 0 |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | RTN4|MITD1 | RTN4 | MITD1 | 2 | 2 | -1 | -1 | 21 | 19 | 17 | 2 | 55276881 | 99790479 | tier1 | In-frame | 15170 | non-validated | 0 |
| LUSC | TCGA-96-A4JK-01A | TCGA-96-A4JK | RTN4R|DNAH2 | RTN4R | DNAH2 | 22 | 17 | -1 | 1 | 5 | 4 | 4 | 0.024 | 20255594 | 7719889 | tier1 | Out-of-frame | 15171 | NA | 0 |
| LUSC | TCGA-43-6770-01A | TCGA-43-6770 | RTN4R|TMEM22 | RTN4R | TMEM22 | 22 | 3 | -1 | 1 | 5 | 5 | 5 | 0.013 | 20255594 | 136573285 | tier1 | CDS-5UTR | 15172 | NA | 0 |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | RWDD1|FAM26D | RWDD1 | FAM26D | 6 | 6 | 1 | 1 | 3 | 2 | 2 | 0.022 | 116906020 | 116878988 | tier1 | In-frame | 15200 | NA | 0 |
| LUSC | TCGA-43-8116-01A | TCGA-43-8116 | RYR3|AVEN | RYR3 | AVEN | 15 | 15 | 1 | -1 | 8 | 4 | 4 | 0.073 | 34049797 | 34168196 | tier1 | Out-of-frame | 15220 | NA | 0 |
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