Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-DK-AA6R-01A | TCGA-DK-AA6R | STK11|C19orf26 | STK11 | C19orf26 | 19 | 19 | 1 | -1 | 4 | 7 | 5 | 0.024 | 1207202 | 1231274 | tier1 | Out-of-frame | 17050 | NA | 0 |
| BLCA | TCGA-4Z-AA87-01A | TCGA-4Z-AA87 | STK24|SLC15A1 | STK24 | SLC15A1 | 13 | 13 | -1 | -1 | 4 | 7 | 6 | 0.35 | 99228999 | 99379113 | tier1 | Out-of-frame | 17067 | NA | 0 |
| BLCA | TCGA-KQ-A41Q-01A | TCGA-KQ-A41Q | STXBP6|SLC44A4 | STXBP6 | SLC44A4 | 14 | 6 | -1 | -1 | 5 | 9 | 9 | 0.11 | 25443871 | 31844859 | tier1 | In-frame | 17153 | NA | 0 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | SYNE2|ATG2B | SYNE2 | ATG2B | 14 | 14 | 1 | -1 | 9 | 4 | 4 | 0.061 | 64498075 | 96761897 | tier1 | In-frame | 17243 | NA | 0 |
| BLCA | TCGA-XF-AAMG-01A | TCGA-XF-AAMG | SYNJ2|SCN11A | SYNJ2 | SCN11A | 6 | 3 | 1 | -1 | 6 | 2 | 2 | 0.49 | 158483196 | 38962746 | tier1 | Out-of-frame | 17256 | NA | 0 |
| BLCA | TCGA-XF-A9SP-01A | TCGA-XF-A9SP | TAB2|UST | TAB2 | UST | 6 | 6 | 1 | 1 | 2 | 2 | 2 | 2.4 | 149700654 | 149394969 | tier3 | In-frame | 17291 | NA | 0 |
| BLCA | TCGA-4Z-AA87-01A | TCGA-4Z-AA87 | TAF3|APP | TAF3 | APP | 10 | 21 | 1 | -1 | 7 | 4 | 4 | 0.18 | 8019286 | 27394358 | tier1 | In-frame | 17326 | NA | 0 |
| BLCA | TCGA-FD-A6TK-01A | TCGA-FD-A6TK | TANC1|PKP4 | TANC1 | PKP4 | 2 | 2 | 1 | 1 | 4 | 1 | 1 | 1.5 | 160007067 | 159389692 | tier2 | CDS-5UTR | 17366 | NA | 0 |
| BLCA | TCGA-SY-A9G5-01A | TCGA-SY-A9G5 | TBC1D8|RNF149 | TBC1D8 | RNF149 | 2 | 2 | -1 | -1 | 4 | 4 | 4 | 4 | 101638143 | 101898519 | tier1 | Out-of-frame | 17505 | NA | 0 |
| BLCA | TCGA-C4-A0F6-01A | TCGA-C4-A0F6 | TBC1D8B|RNF128 | TBC1D8B | RNF128 | X | X | 1 | 1 | 11 | 7 | 6 | 0.57 | 106046213 | 106038810 | tier1 | In-frame | 17506 | NA | 0 |
| BLCA | TCGA-CU-A3KJ-01A | TCGA-CU-A3KJ | TBL1X|GPR143 | TBL1X | GPR143 | X | X | 1 | -1 | 4 | 5 | 5 | 4.5 | 9665469 | 9693880 | tier1 | In-frame | 17540 | NA | 0 |
| BLCA | TCGA-XF-A9ST-01A | TCGA-XF-A9ST | TEAD1|CD47 | TEAD1 | CD47 | 11 | 3 | 1 | -1 | 67 | 63 | 57 | 0.48 | 12697108 | 107779699 | tier1 | 5UTR-CDS | 17627 | NA | 0 |
| BLCA | TCGA-GU-A42Q-01A | TCGA-GU-A42Q | TECR|ICAM3 | TECR | ICAM3 | 19 | 19 | 1 | -1 | 22 | 9 | 8 | 0.26 | 14640523 | 10449624 | tier1 | Out-of-frame | 17649 | NA | 0 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | TFIP11|IL17RA | TFIP11 | IL17RA | 22 | 22 | -1 | 1 | 4 | 4 | 4 | 1.1 | 26906030 | 17577952 | tier1 | Out-of-frame | 17725 | NA | 0 |
| BLCA | TCGA-G2-A2ES-01A | TCGA-G2-A2ES | TFRC|TCTEX1D2 | TFRC | TCTEX1D2 | 3 | 3 | -1 | -1 | 4 | 14 | 13 | 0.12 | 195776156 | 196042149 | tier1 | NA | 17729 | NA | 0 |
| BLCA | TCGA-FD-A3SO-01A | TCGA-FD-A3SO | TGFB1|FXYD5 | TGFB1 | FXYD5 | 19 | 19 | -1 | 1 | 28 | 20 | 14 | 100 | 41838033 | 35655059 | tier1 | Out-of-frame | 17735 | NA | 0 |
| BLCA | TCGA-BL-A0C8-01A | TCGA-BL-A0C8 | TJP2|FXN | TJP2 | FXN | 9 | 9 | 1 | 1 | 3 | 3 | 3 | 1.5 | 71766687 | 71661301 | tier1 | 5UTR-CDS | 17842 | non-validated | 0 |
| BLCA | TCGA-E7-A7DV-01A | TCGA-E7-A7DV | TMEM123|CENPP | TMEM123 | CENPP | 11 | 9 | -1 | 1 | 60 | 49 | 39 | 0.32 | 102319543 | 95373596 | tier1 | Out-of-frame | 17946 | NA | 0 |
| BLCA | TCGA-GD-A3OS-01A | TCGA-GD-A3OS | TMEM127|STAM | TMEM127 | STAM | 2 | 10 | -1 | 1 | 47 | 26 | 25 | 0.13 | 96931607 | 17726674 | tier1 | 5UTR-CDS | 17955 | NA | 0 |
| BLCA | TCGA-XF-A9SU-01A | TCGA-XF-A9SU | TMEM87B|MERTK | TMEM87B | MERTK | 2 | 2 | 1 | 1 | 11 | 13 | 13 | 0.21 | 112834859 | 112765960 | tier1 | In-frame | 18062 | NA | 0 |
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