Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | PLXNC1|CRADD | PLXNC1 | CRADD | 12 | 12 | 1 | 1 | 52 | 28 | 23 | 0.37 | 94659001 | 94243746 | tier1 | Out-of-frame | 13079 | NA | 0.37643 |
| LUSC | TCGA-85-8276-01A | TCGA-85-8276 | PPP1R12A|TBC1D30 | PPP1R12A | TBC1D30 | 12 | 12 | -1 | 1 | 4 | 1 | 1 | 0.036 | 80328475 | 65179661 | tier2 | Out-of-frame | 13353 | NA | 0.3761 |
| LUSC | TCGA-37-4130-01A | TCGA-37-4130 | PPP1R12B|LGR6 | PPP1R12B | LGR6 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.12 | 202386045 | 202245434 | tier3 | In-frame | 13355 | NA | 0.36465 |
| LUSC | TCGA-39-5040-01A | TCGA-39-5040 | PPP1R12B|SUSD4 | PPP1R12B | SUSD4 | 1 | 1 | 1 | -1 | 7 | 5 | 5 | 0.4 | 202318270 | 223408442 | tier4 | Out-of-frame | 13356 | NA | 0.36223 |
| LUSC | TCGA-18-4083-01A | TCGA-18-4083 | PPP6R3|LRP5 | PPP6R3 | LRP5 | 11 | 11 | 1 | 1 | 6 | 7 | 6 | 3.3 | 68228295 | 68213904 | tier4 | 5UTR-CDS | 13459 | NA | 0.36875 |
| LUSC | TCGA-NC-A5HQ-01A | TCGA-NC-A5HQ | PPP6R3|LRP5 | PPP6R3 | LRP5 | 11 | 11 | 1 | 1 | 5 | 1 | 1 | 3.3 | 68287119 | 68204357 | tier3 | 5UTR-CDS | 13462 | NA | 0.36875 |
| LUSC | TCGA-O2-A5IB-01A | TCGA-O2-A5IB | PPP6R3|MGAM | PPP6R3 | MGAM | 11 | 7 | 1 | 1 | 4 | 9 | 7 | 1.7 | 68312492 | 141705329 | tier1 | CDS-5UTR | 13464 | NA | 0.33684 |
| LUSC | TCGA-77-A5GA-01A | TCGA-77-A5GA | PRELID2|MEGF10 | PRELID2 | MEGF10 | 5 | 5 | -1 | 1 | 2 | 1 | 1 | 0.17 | 145144494 | 126769055 | tier2 | 3UTR-CDS | 13506 | NA | 0.36845 |
| LUSC | TCGA-22-4593-01A | TCGA-22-4593 | PRKAR2B|HMCN1 | PRKAR2B | HMCN1 | 7 | 1 | 1 | 1 | 2 | 2 | 2 | 0.7 | 106710761 | 185815158 | tier2 | In-frame | 13537 | NA | 0.36852 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | PRKCA|IGF2BP3 | PRKCA | IGF2BP3 | 17 | 7 | 1 | -1 | 10 | 9 | 5 | 3 | 64492401 | 23358873 | tier1 | In-frame | 13542 | NA | 0.38297 |
| LUSC | TCGA-66-2793-01A | TCGA-66-2793 | PRKCA|SDK1 | PRKCA | SDK1 | 17 | 7 | 1 | 1 | 3 | 2 | 1 | 0.6 | 64641629 | 3990555 | tier2 | In-frame | 13552 | validated | 0.38298 |
| LUSC | TCGA-56-8304-01A | TCGA-56-8304 | PRR12|FLT3LG | PRR12 | FLT3LG | 19 | 19 | 1 | 1 | 3 | 3 | 3 | 0.25 | 50105175 | 49983555 | tier1 | Out-of-frame | 13615 | NA | 0.35993 |
| LUSC | TCGA-56-8629-01A | TCGA-56-8629 | PRTG|ATPBD4 | PRTG | ATPBD4 | 15 | 15 | -1 | -1 | 5 | 2 | 2 | 0.29 | 55971484 | 35834708 | tier1 | In-frame | 13662 | NA | 0.35083 |
| LUSC | TCGA-37-A5EL-01A | TCGA-37-A5EL | PSMC6|GPR137C | PSMC6 | GPR137C | 14 | 14 | 1 | 1 | 10 | 42 | 39 | 0.3 | 53180686 | 53063635 | tier1 | NA | 13718 | NA | 0.36105 |
| LUSC | TCGA-37-A5EN-01A | TCGA-37-A5EN | PTGFRN|CD2 | PTGFRN | CD2 | 1 | 1 | 1 | 1 | 46 | 18 | 16 | 0.1 | 117504290 | 117297253 | tier1 | In-frame | 13769 | NA | 0.36806 |
| LUSC | TCGA-46-3767-01A | TCGA-46-3767 | PTK2|UBE2H | PTK2 | UBE2H | 8 | 7 | -1 | -1 | 2 | 5 | 4 | 3.2 | 142011224 | 129479175 | tier4 | 5UTR-CDS | 13786 | NA | 0.38739 |
| LUSC | TCGA-NC-A5HM-01A | TCGA-NC-A5HM | PTPN4|GRID1 | PTPN4 | GRID1 | 2 | 10 | 1 | -1 | 4 | 3 | 3 | 0.18 | 120567567 | 87489371 | tier1 | In-frame | 13837 | NA | 0.37039 |
| LUSC | TCGA-70-6722-01A | TCGA-70-6722 | PTPRG|MCM3AP | PTPRG | MCM3AP | 3 | 21 | 1 | -1 | 12 | 8 | 8 | 0.048 | 61734656 | 47703752 | tier1 | In-frame | 13865 | NA | 0.36037 |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | PUSL1|AGRN | PUSL1 | AGRN | 1 | 1 | 1 | 1 | 5 | 3 | 3 | 0.027 | 1245231 | 970657 | tier1 | Out-of-frame | 13967 | validated | 0 |
| LUSC | TCGA-37-3792-01A | TCGA-37-3792 | RAD51AP1|SLCO1C1 | RAD51AP1 | SLCO1C1 | 12 | 12 | 1 | 1 | 92 | 58 | 52 | 0.022 | 4653070 | 20890041 | tier1 | In-frame | 14164 | NA | 0 |
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