Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-51-6867-01A | TCGA-51-6867 | PAG1|GAD2 | PAG1 | GAD2 | 8 | 10 | -1 | 1 | 3 | 1 | 1 | 0.022 | 81942231 | 26562565 | tier3 | 5UTR-CDS | 12190 | NA | 0.36944 |
| LUSC | TCGA-56-A4BX-01A | TCGA-56-A4BX | PAK1|LNP1 | PAK1 | LNP1 | 11 | 3 | -1 | 1 | 42 | 29 | 28 | 0.29 | 77184597 | 100148541 | tier1 | 5UTR-5UTR | 12204 | NA | 0.37986 |
| LUSC | TCGA-34-5236-01A | TCGA-34-5236 | PANX1|CCDC67 | PANX1 | CCDC67 | 11 | 11 | 1 | 1 | 61 | 29 | 26 | 0.27 | 93862659 | 93170709 | tier1 | Out-of-frame | 12243 | NA | 0.3559 |
| LUSC | TCGA-77-7140-01A | TCGA-77-7140 | PARD3|NSUN6 | PARD3 | NSUN6 | 10 | 10 | -1 | -1 | 16 | 19 | 19 | 0.039 | 34558585 | 18905222 | tier1 | In-frame | 12277 | NA | 0.37837 |
| LUSC | TCGA-56-A4ZK-01A | TCGA-56-A4ZK | PCID2|ATP4B | PCID2 | ATP4B | 13 | 13 | -1 | -1 | 540 | 1259 | 995 | 0.42 | 113862913 | 114309257 | tier1 | Out-of-frame | 12403 | NA | 0.35646 |
| LUSC | TCGA-22-4613-01A | TCGA-22-4613 | PDE4A|S1PR5 | PDE4A | S1PR5 | 19 | 19 | 1 | -1 | 2 | 2 | 2 | 0.42 | 10574651 | 10625705 | tier2 | CDS-5UTR | 12471 | NA | 0.3686 |
| LUSC | TCGA-56-A4BX-01A | TCGA-56-A4BX | PGAP3|GRB7 | PGAP3 | GRB7 | 17 | 17 | -1 | 1 | 10 | 5 | 5 | 0.21 | 37844087 | 37898505 | tier1 | CDS-5UTR | 12653 | NA | 0.37831 |
| LUSC | TCGA-58-A46K-01A | TCGA-58-A46K | PGD|NTSR1 | PGD | NTSR1 | 1 | 20 | 1 | 1 | 41 | 15 | 12 | 0.024 | 10459761 | 61386037 | tier1 | In-frame | 12662 | NA | 0.36582 |
| LUSC | TCGA-94-7943-01A | TCGA-94-7943 | PHC3|SLC7A14 | PHC3 | SLC7A14 | 3 | 3 | -1 | -1 | 14 | 3 | 3 | 0.26 | 169854207 | 170185165 | tier1 | In-frame | 12695 | non-validated | 0.34948 |
| LUSC | TCGA-51-6867-01A | TCGA-51-6867 | PHLDB2|CD96 | PHLDB2 | CD96 | 3 | 3 | 1 | 1 | 3 | 3 | 3 | 0.27 | 111564782 | 111342601 | tier1 | In-frame | 12754 | NA | 0.35985 |
| LUSC | TCGA-66-2742-01A | TCGA-66-2742 | PHLDB2|RIMS2 | PHLDB2 | RIMS2 | 3 | 8 | 1 | 1 | 15 | 8 | 7 | 0.5 | 111451550 | 105160835 | tier1 | 5UTR-CDS | 12757 | NA | 0.36147 |
| LUSC | TCGA-77-6842-01A | TCGA-77-6842 | PI4KA|PRODH | PI4KA | PRODH | 22 | 22 | -1 | -1 | 4 | 2 | 2 | 2.5 | 21212858 | 18913235 | tier1 | 5UTR-CDS | 12783 | NA | 0.36083 |
| LUSC | TCGA-21-1081-01A | TCGA-21-1081 | PI4KA|RREB1 | PI4KA | RREB1 | 22 | 6 | -1 | 1 | 22 | 24 | 22 | 0.17 | 21188850 | 7211037 | tier1 | Out-of-frame | 12784 | NA | 0.37326 |
| LUSC | TCGA-85-8582-01A | TCGA-85-8582 | PIGK|TGFBR3 | PIGK | TGFBR3 | 1 | 1 | -1 | -1 | 2 | 3 | 3 | 0.025 | 77587960 | 92187701 | tier3 | In-frame | 12812 | NA | 0.3723 |
| LUSC | TCGA-37-4135-01A | TCGA-37-4135 | PIK3C3|TRPC6 | PIK3C3 | TRPC6 | 18 | 11 | 1 | -1 | 10 | 5 | 4 | 0.45 | 39573305 | 101375529 | tier1 | Out-of-frame | 12832 | non-validated | 0.37888 |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | PIK3CB|BFSP2 | PIK3CB | BFSP2 | 3 | 3 | -1 | 1 | 128 | 106 | 96 | 0.9 | 138452203 | 133185672 | tier1 | In-frame | 12833 | non-validated | 0.37755 |
| LUSC | TCGA-66-2754-01A | TCGA-66-2754 | PIP5K1A|SLC20A2 | PIP5K1A | SLC20A2 | 1 | 8 | 1 | -1 | 6 | 1 | 1 | 1.7 | 151171557 | 42330172 | tier2 | CDS-5UTR | 12872 | NA | 0.36856 |
| LUSC | TCGA-39-5024-01A | TCGA-39-5024 | PIP5K1A|TNFAIP8L2 | PIP5K1A | TNFAIP8L2 | 1 | 1 | 1 | 1 | 3 | 4 | 4 | 0.55 | 151171557 | 151131142 | tier4 | CDS-5UTR | 12873 | NA | 0.37019 |
| LUSC | TCGA-56-6545-01A | TCGA-56-6545 | PJA2|GPR98 | PJA2 | GPR98 | 5 | 5 | -1 | 1 | 151 | 506 | 484 | 0.97 | 108745543 | 90445847 | tier1 | 5UTR-CDS | 12904 | NA | 0.36199 |
| LUSC | TCGA-63-A5MP-01A | TCGA-63-A5MP | PLD1|FNDC3B | PLD1 | FNDC3B | 3 | 3 | -1 | 1 | 2 | 1 | 1 | 1.7 | 171528189 | 171830242 | tier3 | 5UTR-5UTR | 12977 | NA | 0.37195 |
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