Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-18-4086-01A | TCGA-18-4086 | NADSYN1|C11orf34 | NADSYN1 | C11orf34 | 11 | 11 | 1 | -1 | 6 | 5 | 5 | 0.53 | 71192450 | 112123132 | tier4 | Out-of-frame | 11070 | NA | 0 |
| LUSC | TCGA-98-A53A-01A | TCGA-98-A53A | NAPG|FAM38B | NAPG | FAM38B | 18 | 18 | 1 | -1 | 19 | 17 | 17 | 0.03 | 10534493 | 10682289 | tier1 | In-frame | 11090 | NA | 0.35061 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | NCAM2|APOL2 | NCAM2 | APOL2 | 21 | 22 | 1 | -1 | 2 | 2 | 2 | 0.78 | 22370936 | 36629501 | tier2 | CDS-5UTR | 11142 | NA | 0.35965 |
| LUSC | TCGA-56-7580-01A | TCGA-56-7580 | NCEH1|FNDC3B | NCEH1 | FNDC3B | 3 | 3 | -1 | 1 | 16 | 5 | 5 | 0.38 | 172428637 | 171944661 | tier1 | Out-of-frame | 11152 | NA | 0.34293 |
| LUSC | TCGA-58-8391-01A | TCGA-58-8391 | NCKAP5|ERBB4 | NCKAP5 | ERBB4 | 2 | 2 | -1 | -1 | 2 | 2 | 2 | 0.94 | 133887550 | 212812341 | tier2 | Out-of-frame | 11166 | NA | 0.38278 |
| LUSC | TCGA-6A-AB49-01A | TCGA-6A-AB49 | NCOA3|GGT7 | NCOA3 | GGT7 | 20 | 20 | 1 | -1 | 10 | 3 | 2 | 2.6 | 46130763 | 33451351 | tier1 | 5UTR-CDS | 11200 | NA | 0.37323 |
| LUSC | TCGA-39-5034-01A | TCGA-39-5034 | NEK7|ATP2B4 | NEK7 | ATP2B4 | 1 | 1 | 1 | 1 | 4 | 2 | 2 | 0.38 | 198126406 | 203651870 | tier1 | 5UTR-5UTR | 11358 | NA | 0.37806 |
| LUSC | TCGA-22-1012-01A | TCGA-22-1012 | NEURL|PDCD11 | NEURL | PDCD11 | 10 | 10 | 1 | 1 | 6 | 7 | 6 | 0.28 | 105254229 | 105165742 | tier1 | Out-of-frame | 11389 | NA | 0.3511 |
| LUSC | TCGA-92-8063-01A | TCGA-92-8063 | NF1|AGTR1 | NF1 | AGTR1 | 17 | 3 | 1 | 1 | 7 | 9 | 6 | 0.088 | 29662049 | 148425731 | tier1 | CDS-5UTR | 11396 | NA | 0.38336 |
| LUSC | TCGA-94-7557-01A | TCGA-94-7557 | NFAT5|CDH3 | NFAT5 | CDH3 | 16 | 16 | 1 | 1 | 16 | 18 | 16 | 1.9 | 69704191 | 68732094 | tier1 | In-frame | 11434 | NA | 0.36846 |
| LUSC | TCGA-34-8456-01A | TCGA-34-8456 | NFIX|DNM2 | NFIX | DNM2 | 19 | 19 | 1 | 1 | 4 | 8 | 7 | 0.027 | 13106678 | 10897240 | tier1 | In-frame | 11495 | NA | 0.38532 |
| LUSC | TCGA-22-4604-01A | TCGA-22-4604 | NFX1|TMEM8B | NFX1 | TMEM8B | 9 | 9 | 1 | 1 | 7 | 8 | 5 | 0.17 | 33354890 | 35845972 | tier1 | Out-of-frame | 11525 | NA | 0.36144 |
| LUSC | TCGA-22-4595-01A | TCGA-22-4595 | NIPBL|FGF10 | NIPBL | FGF10 | 5 | 5 | 1 | -1 | 66 | 25 | 24 | 0.23 | 36962376 | 44310632 | tier4 | In-frame | 11557 | NA | 0.35498 |
| LUSC | TCGA-34-5232-01A | TCGA-34-5232 | NOC4L|STAB2 | NOC4L | STAB2 | 12 | 12 | 1 | 1 | 20 | 12 | 10 | 0.48 | 132633440 | 104142741 | tier1 | In-frame | 11631 | NA | 0.36318 |
| LUSC | TCGA-33-A4WN-01A | TCGA-33-A4WN | NOTCH2|CWH43 | NOTCH2 | CWH43 | 1 | 4 | -1 | 1 | 5 | 4 | 4 | 0.082 | 120506197 | 49032842 | tier1 | In-frame | 11664 | NA | 0.38353 |
| LUSC | TCGA-98-A53I-01A | TCGA-98-A53I | NOTCH3|UBTF | NOTCH3 | UBTF | 19 | 17 | -1 | -1 | 2 | 38 | 1 | 1.4 | 15270445 | 42288699 | tier3 | 3UTR-CDS | 11675 | NA | 0.38059 |
| LUSC | TCGA-21-1076-01A | TCGA-21-1076 | NPLOC4|P4HB | NPLOC4 | P4HB | 17 | 17 | -1 | -1 | 54 | 61 | 52 | 1.7 | 79596751 | 79805223 | tier4 | In-frame | 11697 | non-validated | 0.36511 |
| LUSC | TCGA-39-5031-01A | TCGA-39-5031 | NUMB|GPR68 | NUMB | GPR68 | 14 | 14 | -1 | -1 | 4 | 1 | 1 | 0.53 | 73822334 | 91701523 | tier3 | CDS-5UTR | 11900 | NA | 0.37092 |
| LUSC | TCGA-43-8115-01A | TCGA-43-8115 | NUP35|NCKAP1 | NUP35 | NCKAP1 | 2 | 2 | 1 | -1 | 2 | 4 | 4 | 1 | 183989225 | 183853914 | tier2 | In-frame | 11938 | NA | 0.36139 |
| LUSC | TCGA-NC-A5HF-01A | TCGA-NC-A5HF | P4HB|L3MBTL4 | P4HB | L3MBTL4 | 17 | 18 | -1 | -1 | 39 | 31 | 30 | 0.42 | 79813018 | 6093527 | tier1 | Out-of-frame | 12144 | NA | 0.36755 |
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