Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-60-2698-01A | TCGA-60-2698 | MED20|TLL2 | MED20 | TLL2 | 6 | 10 | -1 | -1 | 20 | 6 | 6 | 2 | 41884523 | 98240216 | tier1 | In-frame | 10207 | non-validated | 0.3622 |
| LUSC | TCGA-58-8392-01A | TCGA-58-8392 | MFSD2A|SLC5A9 | MFSD2A | SLC5A9 | 1 | 1 | 1 | 1 | 13 | 8 | 8 | 0.88 | 40424497 | 48703351 | tier2 | In-frame | 10293 | NA | 0.32759 |
| LUSC | TCGA-46-6026-01A | TCGA-46-6026 | MGAT4C|PLD1 | MGAT4C | PLD1 | 12 | 3 | -1 | -1 | 2 | 1 | 1 | 0.19 | 86443452 | 171455872 | tier2 | 5UTR-5UTR | 10315 | NA | 0.36854 |
| LUSC | TCGA-66-2790-01A | TCGA-66-2790 | MICALCL|HS2ST1 | MICALCL | HS2ST1 | 11 | 1 | 1 | 1 | 3 | 2 | 2 | 2.5 | 12316404 | 87538617 | tier1 | In-frame | 10345 | NA | 0.33915 |
| LUSC | TCGA-43-2581-01A | TCGA-43-2581 | MIF4GD|SDK2 | MIF4GD | SDK2 | 17 | 17 | -1 | -1 | 2 | 2 | 2 | 1.9 | 73266195 | 71443887 | tier2 | Out-of-frame | 10368 | NA | 0.35961 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | MKKS|MMP24 | MKKS | MMP24 | 20 | 20 | -1 | 1 | 4 | 8 | 8 | 1.5 | 10414756 | 33834643 | tier1 | 5UTR-CDS | 10396 | NA | 0.36316 |
| LUSC | TCGA-58-8386-01A | TCGA-58-8386 | MRC2|VMP1 | MRC2 | VMP1 | 17 | 17 | 1 | 1 | 121 | 80 | 73 | 0.46 | 60751531 | 57917129 | tier1 | In-frame | 10639 | NA | 0.34297 |
| LUSC | TCGA-58-A46K-01A | TCGA-58-A46K | MREG|ARL4D | MREG | ARL4D | 2 | 17 | -1 | 1 | 6 | 5 | 4 | 0.89 | 216861029 | 41477029 | tier1 | CDS-5UTR | 10641 | NA | 0.36439 |
| LUSC | TCGA-37-4135-01A | TCGA-37-4135 | MRPL48|GDPD5 | MRPL48 | GDPD5 | 11 | 11 | 1 | -1 | 28 | 20 | 17 | 0.023 | 73519395 | 75155540 | tier1 | Out-of-frame | 10669 | validated | 0.34142 |
| LUSC | TCGA-66-2783-01A | TCGA-66-2783 | MSI2|ICAM2 | MSI2 | ICAM2 | 17 | 17 | 1 | -1 | 255 | 197 | 186 | 0.1 | 55704664 | 62081324 | tier1 | In-frame | 10719 | NA | 0.36322 |
| LUSC | TCGA-63-A5MT-01A | TCGA-63-A5MT | MSL2|OPRM1 | MSL2 | OPRM1 | 3 | 6 | -1 | 1 | 7 | 4 | 4 | 0.41 | 135913814 | 154410961 | tier1 | Out-of-frame | 10734 | NA | 0.37257 |
| LUSC | TCGA-56-5898-01A | TCGA-56-5898 | MSN|HTR3D | MSN | HTR3D | X | 3 | 1 | 1 | 13 | 11 | 1 | 0.067 | 64887720 | 183755809 | tier3 | In-frame | 10745 | NA | 0.37597 |
| LUSC | TCGA-77-8153-01A | TCGA-77-8153 | MXI1|ADD3 | MXI1 | ADD3 | 10 | 10 | 1 | 1 | 4 | 4 | 4 | 0.013 | 111988079 | 111878345 | tier1 | Out-of-frame | 10868 | NA | 0.36546 |
| LUSC | TCGA-43-5670-01A | TCGA-43-5670 | MXRA8|CDK11A | MXRA8 | CDK11A | 1 | 1 | -1 | -1 | 12 | 30 | 28 | 0.26 | 1293836 | 1654270 | tier1 | CDS-5UTR | 10871 | non-validated | 0.33873 |
| LUSC | TCGA-56-7730-01A | TCGA-56-7730 | MYNN|NLGN1 | MYNN | NLGN1 | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 0.13 | 169492349 | 173525470 | tier4 | Out-of-frame | 10938 | NA | 0.36546 |
| LUSC | TCGA-94-8491-01A | TCGA-94-8491 | MYO1C|SMG6 | MYO1C | SMG6 | 17 | 17 | -1 | -1 | 10 | 5 | 5 | 0.092 | 1377904 | 1989195 | tier1 | In-frame | 10966 | NA | 0.36408 |
| LUSC | TCGA-33-4538-01A | TCGA-33-4538 | NAALADL2|ABCC5 | NAALADL2 | ABCC5 | 3 | 3 | 1 | -1 | 45 | 27 | 27 | 1 | 175345174 | 183643507 | tier1 | In-frame | 11048 | NA | 0.34659 |
| LUSC | TCGA-56-7730-01A | TCGA-56-7730 | NAALADL2|MCCC1 | NAALADL2 | MCCC1 | 3 | 3 | 1 | -1 | 12 | 11 | 2 | 0.14 | 175345174 | 182755222 | tier1 | In-frame | 11051 | NA | 0.34311 |
| LUSC | TCGA-70-6722-01A | TCGA-70-6722 | NAALADL2|NCKAP5 | NAALADL2 | NCKAP5 | 3 | 2 | 1 | -1 | 7 | 2 | 2 | 1.3 | 175189546 | 133626547 | tier1 | In-frame | 11052 | NA | 0.32905 |
| LUSC | TCGA-56-1622-01A | TCGA-56-1622 | NAALADL2|SMC5 | NAALADL2 | SMC5 | 3 | 9 | 1 | 1 | 3 | 1 | 1 | 0.086 | 174577240 | 72959060 | tier3 | Out-of-frame | 11057 | non-validated | 0.33775 |
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