Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-33-AASB-01A | TCGA-33-AASB | LMBRD1|COL9A1 | LMBRD1 | COL9A1 | 6 | 6 | -1 | -1 | 4 | 1 | 1 | 0.37 | 70490386 | 71004266 | tier3 | Out-of-frame | 9393 | NA | 0.35487 |
| LUSC | TCGA-63-A5MG-01A | TCGA-63-A5MG | LMTK2|IMMP2L | LMTK2 | IMMP2L | 7 | 7 | 1 | -1 | 4 | 16 | 11 | 0.48 | 97800986 | 110603621 | tier1 | In-frame | 9408 | NA | 0.3674 |
| LUSC | TCGA-92-8063-01A | TCGA-92-8063 | LMTK2|PCLO | LMTK2 | PCLO | 7 | 7 | 1 | -1 | 9 | 5 | 4 | 0.53 | 97780767 | 82785708 | tier1 | Out-of-frame | 9409 | NA | 0.37267 |
| LUSC | TCGA-85-6175-01A | TCGA-85-6175 | LOH12CR1|PTPRR | LOH12CR1 | PTPRR | 12 | 12 | 1 | -1 | 47 | 13 | 13 | 0.002 | 12514283 | 71095103 | tier1 | Out-of-frame | 9421 | NA | 0.37773 |
| LUSC | TCGA-92-7341-01A | TCGA-92-7341 | LPHN3|BBS9 | LPHN3 | BBS9 | 4 | 7 | 1 | 1 | 6 | 6 | 6 | 0.28 | 62383236 | 33644477 | tier1 | In-frame | 9447 | NA | 0.34926 |
| LUSC | TCGA-22-5491-01A | TCGA-22-5491 | LPP|GOLIM4 | LPP | GOLIM4 | 3 | 3 | 1 | -1 | 4 | 4 | 4 | 0.23 | 187943315 | 167766153 | tier1 | 5UTR-CDS | 9461 | NA | 0.36627 |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | LPP|ST6GAL1 | LPP | ST6GAL1 | 3 | 3 | 1 | 1 | 7 | 9 | 9 | 0.87 | 187871809 | 186790637 | tier1 | 5UTR-CDS | 9467 | non-validated | 0.36661 |
| LUSC | TCGA-NC-A5HL-01A | TCGA-NC-A5HL | LRRC8D|TMEM9 | LRRC8D | TMEM9 | 1 | 1 | 1 | -1 | 17 | 13 | 11 | 3.3 | 90286850 | 201115976 | tier1 | 5UTR-CDS | 9605 | NA | 0.3496 |
| LUSC | TCGA-92-8064-01A | TCGA-92-8064 | LYPD6B|MBD5 | LYPD6B | MBD5 | 2 | 2 | 1 | 1 | 2 | 6 | 6 | 0.14 | 149895315 | 149225910 | tier2 | 5UTR-CDS | 9701 | non-validated | 0.34619 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | MACF1|INPP5B | MACF1 | INPP5B | 1 | 1 | 1 | -1 | 77 | 44 | 36 | 1.1 | 39920769 | 38352676 | tier1 | In-frame | 9732 | NA | 0.36947 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | MACF1|RHBDL2 | MACF1 | RHBDL2 | 1 | 1 | 1 | -1 | 36 | 19 | 14 | 0.51 | 39571389 | 39385009 | tier1 | NA | 9734 | NA | 0.36911 |
| LUSC | TCGA-O2-A52S-01A | TCGA-O2-A52S | MAP3K3|FCHSD2 | MAP3K3 | FCHSD2 | 17 | 11 | 1 | -1 | 12 | 5 | 4 | 0.22 | 61710162 | 72726930 | tier1 | CDS-5UTR | 9868 | NA | 0.38241 |
| LUSC | TCGA-18-3421-01A | TCGA-18-3421 | MAPK10|UGT8 | MAPK10 | UGT8 | 4 | 4 | -1 | 1 | 6 | 6 | 4 | 0.049 | 87374183 | 115544035 | tier2 | 5UTR-5UTR | 9938 | NA | 0.3877 |
| LUSC | TCGA-43-5668-01A | TCGA-43-5668 | MARCH1|PTPN13 | MARCH1 | PTPN13 | 4 | 4 | -1 | 1 | 4 | 2 | 2 | 0.52 | 164909653 | 87556405 | tier1 | 5UTR-5UTR | 9978 | NA | 0 |
| LUSC | TCGA-94-7557-01A | TCGA-94-7557 | MARK2|BUB1B | MARK2 | BUB1B | 11 | 15 | 1 | 1 | 16 | 14 | 12 | 2.2 | 63607032 | 40468678 | tier1 | In-frame | 9997 | NA | 0.38869 |
| LUSC | TCGA-85-A53L-01A | TCGA-85-A53L | MARK3|EIF5 | MARK3 | EIF5 | 14 | 14 | 1 | 1 | 53 | 28 | 25 | 0.22 | 103871604 | 103801990 | tier1 | CDS-5UTR | 10005 | NA | 0.38169 |
| LUSC | TCGA-18-3411-01A | TCGA-18-3411 | MARK3|ENTPD5 | MARK3 | ENTPD5 | 14 | 14 | 1 | -1 | 2 | 2 | 2 | 9.3 | 103946827 | 74482633 | tier2 | CDS-5UTR | 10006 | NA | 0.38041 |
| LUSC | TCGA-43-5668-01A | TCGA-43-5668 | MARK3|FBLN5 | MARK3 | FBLN5 | 14 | 14 | 1 | -1 | 16 | 4 | 4 | 0.09 | 103871604 | 92361416 | tier1 | Out-of-frame | 10007 | NA | 0.38387 |
| LUSC | TCGA-43-5668-01A | TCGA-43-5668 | MDK|ERBB3 | MDK | ERBB3 | 11 | 12 | 1 | 1 | 2 | 9 | 2 | 0.85 | 46405349 | 56492035 | tier2 | 3UTR-5UTR | 10112 | NA | 0.38638 |
| LUSC | TCGA-66-2793-01A | TCGA-66-2793 | MED15|PI4KA | MED15 | PI4KA | 22 | 22 | 1 | -1 | 295 | 140 | 132 | 0.81 | 20855123 | 21104282 | tier1 | NA | 10200 | validated | 0.36586 |
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