Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-63-A5MB-01A | TCGA-63-A5MB | KCNQ3|LRRC6 | KCNQ3 | LRRC6 | 8 | 8 | -1 | -1 | 4 | 1 | 1 | 1.1 | 133492394 | 133596026 | tier3 | Out-of-frame | 8604 | NA | 0.3603 |
| LUSC | TCGA-85-8354-01A | TCGA-85-8354 | KCNQ5|AMPH | KCNQ5 | AMPH | 6 | 7 | 1 | -1 | 29 | 18 | 15 | 0.072 | 73815090 | 38433814 | tier1 | In-frame | 8607 | NA | 0.37444 |
| LUSC | TCGA-60-2722-01A | TCGA-60-2722 | KCNQ5|DST | KCNQ5 | DST | 6 | 6 | 1 | -1 | 4 | 3 | 2 | 0.039 | 73332315 | 56342286 | tier1 | Out-of-frame | 8609 | non-validated | 0.37588 |
| LUSC | TCGA-98-8022-01A | TCGA-98-8022 | KDM4A|PTCH2 | KDM4A | PTCH2 | 1 | 1 | 1 | -1 | 19 | 12 | 11 | 2.4 | 44137546 | 45286376 | tier1 | Out-of-frame | 8662 | validated | 0.34161 |
| LUSC | TCGA-66-2758-01A | TCGA-66-2758 | KIAA0100|SEZ6 | KIAA0100 | SEZ6 | 17 | 17 | -1 | -1 | 18 | 18 | 16 | 1.1 | 26945809 | 27296970 | tier1 | In-frame | 8727 | NA | 0.35874 |
| LUSC | TCGA-22-5485-01A | TCGA-22-5485 | KIAA0195|NUP85 | KIAA0195 | NUP85 | 17 | 17 | 1 | 1 | 11 | 3 | 3 | 0.037 | 73468010 | 73204622 | tier4 | In-frame | 8751 | non-validated | 0.35507 |
| LUSC | TCGA-46-6025-01A | TCGA-46-6025 | KIAA1033|PCDH9 | KIAA1033 | PCDH9 | 12 | 13 | 1 | -1 | 6 | 4 | 3 | 0.37 | 105534179 | 67477737 | tier4 | In-frame | 8819 | NA | 0.34818 |
| LUSC | TCGA-NC-A5HP-01A | TCGA-NC-A5HP | KIAA1217|LPP | KIAA1217 | LPP | 10 | 3 | 1 | 1 | 4 | 6 | 4 | 0.12 | 24528266 | 188242453 | tier1 | NA | 8836 | NA | 0.36815 |
| LUSC | TCGA-96-7544-01A | TCGA-96-7544 | KIAA1432|SLC1A1 | KIAA1432 | SLC1A1 | 9 | 9 | 1 | 1 | 2 | 1 | 1 | 3.1 | 5720750 | 4544567 | tier2 | Out-of-frame | 8882 | NA | 0.35671 |
| LUSC | TCGA-33-4582-01A | TCGA-33-4582 | KIAA1609|CYBA | KIAA1609 | CYBA | 16 | 16 | -1 | -1 | 23 | 19 | 18 | 1.5 | 84516198 | 88709979 | tier4 | In-frame | 8892 | NA | 0.36451 |
| LUSC | TCGA-66-2765-01A | TCGA-66-2765 | KIAA1967|FGFR2 | KIAA1967 | FGFR2 | 8 | 10 | 1 | -1 | 7 | 16 | 15 | 0.23 | 22462355 | 123239535 | tier1 | 5UTR-CDS | 8917 | NA | 0.38427 |
| LUSC | TCGA-96-8169-01A | TCGA-96-8169 | KIT|DNAJB14 | KIT | DNAJB14 | 4 | 4 | 1 | -1 | 3 | 1 | 1 | 1.1 | 55598164 | 100851778 | tier2 | Out-of-frame | 9026 | NA | 0.38512 |
| LUSC | TCGA-85-8287-01A | TCGA-85-8287 | KIT|SLC4A4 | KIT | SLC4A4 | 4 | 4 | 1 | 1 | 25 | 8 | 8 | 0.12 | 55599358 | 72102293 | tier1 | CDS-5UTR | 9029 | NA | 0.38728 |
| LUSC | TCGA-22-1017-01A | TCGA-22-1017 | KITLG|CCDC6 | KITLG | CCDC6 | 12 | 10 | -1 | -1 | 12 | 4 | 4 | 1.2 | 88974041 | 61612460 | tier1 | In-frame | 9031 | NA | 0.37265 |
| LUSC | TCGA-18-3414-01A | TCGA-18-3414 | KITLG|TNNC1 | KITLG | TNNC1 | 12 | 3 | -1 | -1 | 5 | 6 | 6 | 0.52 | 88974041 | 52486268 | tier1 | Out-of-frame | 9034 | NA | 0.372 |
| LUSC | TCGA-56-8082-01A | TCGA-56-8082 | KRT19|CTNND1 | KRT19 | CTNND1 | 17 | 11 | -1 | 1 | 3 | 7 | 1 | 1.1 | 39679869 | 57574387 | tier4 | 3UTR-CDS | 9143 | NA | 0.38403 |
| LUSC | TCGA-O2-A52N-01A | TCGA-O2-A52N | LANCL2|CHODL | LANCL2 | CHODL | 7 | 21 | 1 | 1 | 4 | 4 | 3 | 0.11 | 55433922 | 19628826 | tier1 | Out-of-frame | 9217 | NA | 0.34043 |
| LUSC | TCGA-85-A50M-01A | TCGA-85-A50M | LDLRAD3|SNCB | LDLRAD3 | SNCB | 11 | 5 | 1 | -1 | 26 | 7 | 6 | 0.65 | 36120011 | 176053762 | tier1 | In-frame | 9280 | NA | 0.35448 |
| LUSC | TCGA-68-8250-01A | TCGA-68-8250 | LIFR|BCAS3 | LIFR | BCAS3 | 5 | 17 | -1 | 1 | 65 | 52 | 50 | 0.11 | 38496484 | 59445688 | tier1 | In-frame | 9327 | non-validated | 0.37322 |
| LUSC | TCGA-85-A50M-01A | TCGA-85-A50M | LINGO2|TLN1 | LINGO2 | TLN1 | 9 | 9 | -1 | -1 | 4 | 5 | 5 | 0.079 | 28475938 | 35708481 | tier1 | 5UTR-CDS | 9363 | NA | 0.37641 |
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