Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-85-7698-01A | TCGA-85-7698 | IGSF3|PARL | IGSF3 | PARL | 1 | 3 | -1 | -1 | 18 | 18 | 13 | 1.3 | 117122014 | 183547497 | tier1 | Out-of-frame | 8132 | NA | 0.34731 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | IL17RA|SCARF2 | IL17RA | SCARF2 | 22 | 22 | 1 | -1 | 3 | 4 | 4 | 0.3 | 17566119 | 20784120 | tier1 | Out-of-frame | 8163 | NA | 0.3442 |
| LUSC | TCGA-98-A53B-01A | TCGA-98-A53B | IL1RAP|COL6A5 | IL1RAP | COL6A5 | 3 | 3 | 1 | 1 | 15 | 9 | 9 | 0.13 | 190282142 | 130092454 | tier1 | CDS-5UTR | 8170 | NA | 0.36599 |
| LUSC | TCGA-22-5491-01A | TCGA-22-5491 | IL1RAP|TMEM207 | IL1RAP | TMEM207 | 3 | 3 | 1 | -1 | 6 | 3 | 2 | 3 | 190326970 | 190165616 | tier1 | In-frame | 8172 | NA | 0.36856 |
| LUSC | TCGA-39-5035-01A | TCGA-39-5035 | IL1RAP|TP63 | IL1RAP | TP63 | 3 | 3 | 1 | 1 | 193 | 59 | 52 | 0.069 | 190232008 | 189526061 | tier2 | 5UTR-CDS | 8173 | NA | 0.37543 |
| LUSC | TCGA-90-6837-01A | TCGA-90-6837 | IL1RAP|TPRG1 | IL1RAP | TPRG1 | 3 | 3 | 1 | 1 | 4 | 1 | 1 | 0.93 | 190232008 | 188844846 | tier3 | 5UTR-5UTR | 8174 | NA | 0.36971 |
| LUSC | TCGA-NC-A5HH-01A | TCGA-NC-A5HH | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 12 | 5 | 4 | 0.019 | 14160126 | 14141522 | tier1 | In-frame | 8189 | NA | 0.36098 |
| LUSC | TCGA-22-4601-01A | TCGA-22-4601 | INADL|PRSS50 | INADL | PRSS50 | 1 | 3 | 1 | -1 | 4 | 2 | 2 | 0.91 | 62393501 | 46761493 | tier1 | In-frame | 8228 | NA | 0.36964 |
| LUSC | TCGA-43-5670-01A | TCGA-43-5670 | IQCK|ABCC1 | IQCK | ABCC1 | 16 | 16 | 1 | 1 | 4 | 2 | 2 | 2.1 | 19746772 | 16126966 | tier1 | In-frame | 8311 | validated | 0.35047 |
| LUSC | TCGA-63-A5M9-01A | TCGA-63-A5M9 | ITGA2|CEACAM21 | ITGA2 | CEACAM21 | 5 | 19 | 1 | 1 | 24 | 19 | 19 | 1.6 | 52379283 | 42083552 | tier2 | CDS-5UTR | 8373 | NA | 0.36836 |
| LUSC | TCGA-39-5035-01A | TCGA-39-5035 | ITGA5|GTSF1 | ITGA5 | GTSF1 | 12 | 12 | -1 | -1 | 2 | 2 | 2 | 0.89 | 54795157 | 54858951 | tier4 | Out-of-frame | 8381 | NA | 0.36781 |
| LUSC | TCGA-43-2578-01A | TCGA-43-2578 | ITGAV|FARP2 | ITGAV | FARP2 | 2 | 2 | 1 | 1 | 6 | 5 | 4 | 1 | 187534541 | 242429377 | tier1 | In-frame | 8391 | NA | 0.37825 |
| LUSC | TCGA-60-2722-01A | TCGA-60-2722 | ITGB4|OTOP2 | ITGB4 | OTOP2 | 17 | 17 | 1 | 1 | 6 | 2 | 2 | 0.13 | 73717692 | 72926374 | tier1 | 5UTR-CDS | 8399 | non-validated | 0.37835 |
| LUSC | TCGA-85-A50M-01A | TCGA-85-A50M | ITGB4|PTN | ITGB4 | PTN | 17 | 7 | 1 | -1 | 2 | 11 | 11 | 0.34 | 73753898 | 136938384 | tier3 | 3UTR-CDS | 8401 | NA | 0.3805 |
| LUSC | TCGA-22-1005-01A | TCGA-22-1005 | ITGB6|RBMS1 | ITGB6 | RBMS1 | 2 | 2 | -1 | -1 | 11 | 14 | 13 | 0.71 | 161055690 | 161141555 | tier1 | In-frame | 8410 | NA | 0.37156 |
| LUSC | TCGA-60-2706-01A | TCGA-60-2706 | ITM2B|ESD | ITM2B | ESD | 13 | 13 | 1 | -1 | 28 | 14 | 13 | 100 | 48807613 | 47367579 | tier1 | CDS-5UTR | 8421 | NA | 0.35166 |
| LUSC | TCGA-22-5477-01A | TCGA-22-5477 | ITPR1|SUMF1 | ITPR1 | SUMF1 | 3 | 3 | 1 | -1 | 6 | 2 | 2 | 4 | 4536190 | 4110429 | tier1 | 5UTR-CDS | 8449 | non-validated | 0.37377 |
| LUSC | TCGA-85-8582-01A | TCGA-85-8582 | JUP|EIF2AK2 | JUP | EIF2AK2 | 17 | 2 | -1 | -1 | 2 | 1 | 1 | 100 | 39775692 | 37342384 | tier3 | NA | 8508 | NA | 0.38568 |
| LUSC | TCGA-43-8115-01A | TCGA-43-8115 | KAT6A|CSMD1 | KAT6A | CSMD1 | 8 | 8 | -1 | -1 | 3 | 5 | 4 | 0.33 | 41905896 | 4495080 | tier1 | Out-of-frame | 8527 | NA | 0.33226 |
| LUSC | TCGA-60-2720-01A | TCGA-60-2720 | KCNK5|KIF6 | KCNK5 | KIF6 | 6 | 6 | -1 | -1 | 15 | 16 | 13 | 1.2 | 39196702 | 39398937 | tier1 | Out-of-frame | 8579 | NA | 0.35365 |
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