Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-85-8664-01A | TCGA-85-8664 | GNAS|SUPT16H | GNAS | SUPT16H | 20 | 14 | 1 | -1 | 2 | 63 | 14 | 0.62 | 57486241 | 21829491 | tier3 | 3UTR-CDS | 7203 | NA | 0.38489 |
| LUSC | TCGA-34-8454-01A | TCGA-34-8454 | GNB1|CALML6 | GNB1 | CALML6 | 1 | 1 | -1 | 1 | 12 | 67 | 62 | 1.5 | 1822259 | 1847880 | tier1 | 5UTR-CDS | 7214 | NA | 0.37305 |
| LUSC | TCGA-18-3416-01A | TCGA-18-3416 | GOLPH3|LRTM1 | GOLPH3 | LRTM1 | 5 | 3 | -1 | -1 | 3 | 2 | 2 | 0.48 | 32135678 | 54952919 | tier1 | In-frame | 7281 | NA | 0.34255 |
| LUSC | TCGA-66-2789-01A | TCGA-66-2789 | GPC1|ANKFN1 | GPC1 | ANKFN1 | 2 | 17 | 1 | 1 | 8 | 16 | 16 | 1.1 | 241375501 | 54428127 | tier1 | Out-of-frame | 7323 | validated | 0.35927 |
| LUSC | TCGA-46-6025-01A | TCGA-46-6025 | GPC1|MFN1 | GPC1 | MFN1 | 2 | 3 | 1 | 1 | 2 | 3 | 2 | 2.4 | 241407493 | 179096011 | tier3 | NA | 7324 | NA | 0.36176 |
| LUSC | TCGA-98-8021-01A | TCGA-98-8021 | GPNMB|IRF6 | GPNMB | IRF6 | 7 | 1 | 1 | -1 | 2 | 1 | 1 | 0.13 | 23314253 | 209979465 | tier3 | 3UTR-5UTR | 7346 | NA | 0.3516 |
| LUSC | TCGA-46-3769-01A | TCGA-46-3769 | GPR146|DTNBP1 | GPR146 | DTNBP1 | 7 | 6 | 1 | -1 | 2 | 6 | 6 | 0.47 | 1084294 | 15533626 | tier2 | NA | 7364 | NA | 0.35661 |
| LUSC | TCGA-21-1076-01A | TCGA-21-1076 | GSN|UTRN | GSN | UTRN | 9 | 6 | 1 | 1 | 2 | 8 | 2 | 0.38 | 124095120 | 144665237 | tier3 | NA | 7501 | non-validated | 0.38067 |
| LUSC | TCGA-LA-A446-01A | TCGA-LA-A446 | HCFC1|EPHA5 | HCFC1 | EPHA5 | X | 4 | -1 | -1 | 2 | 2 | 1 | 9.2 | 153236099 | 66189937 | tier2 | Out-of-frame | 7603 | NA | 0.37396 |
| LUSC | TCGA-66-2766-01A | TCGA-66-2766 | HCK|C20orf160 | HCK | C20orf160 | 20 | 20 | 1 | 1 | 16 | 6 | 4 | 0.017 | 30640289 | 30616798 | tier1 | 5UTR-CDS | 7607 | non-validated | 0 |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | HEG1|SLC12A8 | HEG1 | SLC12A8 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 0.008 | 124774419 | 124854626 | tier3 | In-frame | 7685 | NA | 0.34984 |
| LUSC | TCGA-77-7139-01A | TCGA-77-7139 | HIAT1|PALMD | HIAT1 | PALMD | 1 | 1 | 1 | 1 | 5 | 2 | 2 | 0.25 | 100535241 | 100127875 | tier1 | In-frame | 7747 | non-validated | 0.33905 |
| LUSC | TCGA-96-7544-01A | TCGA-96-7544 | HIBCH|MFSD6 | HIBCH | MFSD6 | 2 | 2 | -1 | 1 | 2 | 2 | 2 | 1.5 | 191109613 | 191300703 | tier2 | CDS-5UTR | 7753 | NA | 0.34439 |
| LUSC | TCGA-39-5011-01A | TCGA-39-5011 | HIPK2|GRM8 | HIPK2 | GRM8 | 7 | 7 | -1 | -1 | 52 | 26 | 25 | 0.18 | 139285163 | 126249552 | tier1 | Out-of-frame | 7773 | NA | 0.38894 |
| LUSC | TCGA-22-0944-01A | TCGA-22-0944 | HNRNPA2B1|DSP | HNRNPA2B1 | DSP | 7 | 6 | -1 | 1 | 3 | 7 | 1 | 0.11 | 26231467 | 7575528 | tier4 | 3UTR-CDS | 7883 | NA | 0.36875 |
| LUSC | TCGA-66-2758-01A | TCGA-66-2758 | HSP90AA1|RAGE | HSP90AA1 | RAGE | 14 | 14 | -1 | -1 | 12 | 2 | 2 | 0.069 | 102605587 | 102718332 | tier1 | Out-of-frame | 7984 | NA | 0.37662 |
| LUSC | TCGA-77-7338-01A | TCGA-77-7338 | ICAM1|HNRNPM | ICAM1 | HNRNPM | 19 | 19 | 1 | 1 | 68 | 86 | 79 | 0.3 | 10385704 | 8550487 | tier1 | In-frame | 8046 | NA | 0.37949 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | IGF2BP3|PRKCA | IGF2BP3 | PRKCA | 7 | 17 | -1 | 1 | 2 | 11 | 6 | 0.86 | 23381683 | 64637473 | tier2 | In-frame | 8109 | NA | 0.38297 |
| LUSC | TCGA-66-2800-01A | TCGA-66-2800 | IGF2R|SYTL3 | IGF2R | SYTL3 | 6 | 6 | 1 | 1 | 3 | 7 | 6 | 2.6 | 160390427 | 159129354 | tier1 | In-frame | 8114 | NA | 0.36651 |
| LUSC | TCGA-46-3767-01A | TCGA-46-3767 | IGFBP4|UTRN | IGFBP4 | UTRN | 17 | 6 | 1 | 1 | 2 | 1 | 1 | 0.97 | 38613983 | 144665237 | tier3 | NA | 8118 | NA | 0.37293 |
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