Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-66-2767-01A | TCGA-66-2767 | FGF3|LGR4 | FGF3 | LGR4 | 11 | 11 | -1 | -1 | 2 | 1 | 1 | 0.16 | 69631088 | 27434407 | tier2 | Out-of-frame | 6453 | NA | 0.37264 |
| LUSC | TCGA-66-2765-01A | TCGA-66-2765 | FGFR2|KIAA1967 | FGFR2 | KIAA1967 | 10 | 8 | -1 | 1 | 40 | 11 | 9 | 0.23 | 123243212 | 22464120 | tier1 | In-frame | 6469 | NA | 0.38427 |
| LUSC | TCGA-22-4607-01A | TCGA-22-4607 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 156 | 18 | 17 | 0.12 | 1808661 | 1737000 | tier1 | Out-of-frame | 6480 | NA | 0.38077 |
| LUSC | TCGA-34-2608-01A | TCGA-34-2608 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 19 | 16 | 14 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6482 | NA | 0.38077 |
| LUSC | TCGA-39-5024-01A | TCGA-39-5024 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1181 | 497 | 440 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6484 | NA | 0.38077 |
| LUSC | TCGA-63-7022-01A | TCGA-63-7022 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2 | 1 | 1 | 0.12 | 1808661 | 1746245 | tier3 | In-frame | 6485 | NA | 0.38077 |
| LUSC | TCGA-66-2786-01A | TCGA-66-2786 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 4157 | 4264 | 3894 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6486 | NA | 0.38077 |
| LUSC | TCGA-92-8065-01A | TCGA-92-8065 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 33 | 20 | 17 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6488 | NA | 0.38077 |
| LUSC | TCGA-NC-A5HH-01A | TCGA-NC-A5HH | FLNA|MTCP1NB | FLNA | MTCP1NB | X | X | -1 | -1 | 12 | 4 | 4 | 1.2 | 153602874 | 154292308 | tier1 | 5UTR-5UTR | 6562 | NA | 0.37536 |
| LUSC | TCGA-85-7950-01A | TCGA-85-7950 | FN1|UTRN | FN1 | UTRN | 2 | 6 | -1 | 1 | 2 | 2 | 2 | 0.32 | 216225181 | 144665237 | tier3 | NA | 6593 | NA | 0.37814 |
| LUSC | TCGA-96-7544-01A | TCGA-96-7544 | FNBP4|PVRL1 | FNBP4 | PVRL1 | 11 | 11 | -1 | -1 | 81 | 80 | 73 | 0.24 | 47786822 | 119548567 | tier1 | In-frame | 6600 | NA | 0.37765 |
| LUSC | TCGA-21-1077-01A | TCGA-21-1077 | FNDC3B|NAALADL2 | FNDC3B | NAALADL2 | 3 | 3 | 1 | 1 | 24 | 19 | 18 | 0.4 | 171757561 | 174814580 | tier1 | 5UTR-CDS | 6609 | NA | 0.34381 |
| LUSC | TCGA-51-6867-01A | TCGA-51-6867 | FNDC3B|SLC7A14 | FNDC3B | SLC7A14 | 3 | 3 | 1 | -1 | 191 | 215 | 201 | 0.41 | 171757561 | 170204157 | tier1 | 5UTR-CDS | 6614 | NA | 0.34761 |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | FRAS1|MRPL1 | FRAS1 | MRPL1 | 4 | 4 | 1 | 1 | 6 | 3 | 3 | 0.19 | 78987170 | 78870951 | tier1 | In-frame | 6709 | non-validated | 0.34948 |
| LUSC | TCGA-63-A5MV-01A | TCGA-63-A5MV | FXR1|FGF10 | FXR1 | FGF10 | 3 | 5 | 1 | -1 | 14 | 31 | 27 | 3.1 | 180630524 | 44389158 | tier1 | NA | 6838 | NA | 0.36659 |
| LUSC | TCGA-85-A50M-01A | TCGA-85-A50M | G3BP1|PCDH9 | G3BP1 | PCDH9 | 5 | 13 | 1 | -1 | 78 | 43 | 38 | 0.19 | 151166276 | 66879160 | tier1 | Out-of-frame | 6874 | NA | 0.37654 |
| LUSC | TCGA-94-8491-01A | TCGA-94-8491 | G3BP1|SLC36A1 | G3BP1 | SLC36A1 | 5 | 5 | 1 | 1 | 15 | 9 | 5 | 0.61 | 151151597 | 150856151 | tier1 | 5UTR-CDS | 6876 | NA | 0.37043 |
| LUSC | TCGA-22-5489-01A | TCGA-22-5489 | GABRG3|OCA2 | GABRG3 | OCA2 | 15 | 15 | 1 | -1 | 2 | 1 | 1 | 0.79 | 27271968 | 28000618 | tier4 | Out-of-frame | 6903 | NA | 0.34219 |
| LUSC | TCGA-18-3412-01A | TCGA-18-3412 | GAN|GRM7 | GAN | GRM7 | 16 | 3 | 1 | 1 | 4 | 1 | 1 | 0.71 | 81348885 | 7188139 | tier4 | Out-of-frame | 6944 | NA | 0.37761 |
| LUSC | TCGA-43-2578-01A | TCGA-43-2578 | GLG1|CFDP1 | GLG1 | CFDP1 | 16 | 16 | -1 | -1 | 104 | 44 | 18 | 0.12 | 74566019 | 75327940 | tier1 | Out-of-frame | 7093 | NA | 0.36192 |
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