Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-77-8009-01A | TCGA-77-8009 | ENO1|UVRAG | ENO1 | UVRAG | 1 | 11 | -1 | 1 | 2 | 12 | 9 | 0.006 | 8921061 | 75694431 | tier3 | 3UTR-CDS | 5592 | NA | 0.36888 |
| LUSC | TCGA-98-A538-01A | TCGA-98-A538 | EPB41L1|C20orf152 | EPB41L1 | C20orf152 | 20 | 20 | 1 | 1 | 85 | 39 | 36 | 0.17 | 34800298 | 34582960 | tier1 | In-frame | 5638 | NA | 0 |
| LUSC | TCGA-66-2788-01A | TCGA-66-2788 | EPB41L2|LAMA2 | EPB41L2 | LAMA2 | 6 | 6 | -1 | 1 | 3 | 1 | 1 | 0.46 | 131247745 | 129704267 | tier2 | In-frame | 5648 | NA | 0.37294 |
| LUSC | TCGA-33-4586-01A | TCGA-33-4586 | EPB41L3|LRRC34 | EPB41L3 | LRRC34 | 18 | 3 | -1 | -1 | 2 | 1 | 1 | 3.9 | 5478240 | 169513399 | tier2 | Out-of-frame | 5653 | non-validated | 0.36954 |
| LUSC | TCGA-34-5236-01A | TCGA-34-5236 | EPHA4|COL4A3 | EPHA4 | COL4A3 | 2 | 2 | -1 | 1 | 2 | 1 | 1 | 1.8 | 222428451 | 228102684 | tier3 | Out-of-frame | 5670 | NA | 0.38352 |
| LUSC | TCGA-56-A4BY-01A | TCGA-56-A4BY | ERBB2|TCAP | ERBB2 | TCAP | 17 | 17 | 1 | 1 | 42 | 23 | 19 | 0.002 | 37872858 | 37821969 | tier1 | Out-of-frame | 5731 | NA | 0.3839 |
| LUSC | TCGA-98-A53A-01A | TCGA-98-A53A | ERBB3|SUOX | ERBB3 | SUOX | 12 | 12 | 1 | 1 | 2 | 2 | 2 | 0.6 | 56494029 | 56395996 | tier4 | CDS-5UTR | 5743 | NA | 0.38485 |
| LUSC | TCGA-56-8622-01A | TCGA-56-8622 | ERC1|MRPL51 | ERC1 | MRPL51 | 12 | 12 | 1 | -1 | 16 | 16 | 5 | 0.031 | 1100653 | 6602138 | tier1 | 5UTR-CDS | 5748 | NA | 0.35884 |
| LUSC | TCGA-94-7943-01A | TCGA-94-7943 | ERICH1|IYD | ERICH1 | IYD | 8 | 6 | -1 | 1 | 13 | 16 | 16 | 0.28 | 618598 | 150710488 | tier1 | In-frame | 5779 | non-validated | 0.3383 |
| LUSC | TCGA-6A-AB49-01A | TCGA-6A-AB49 | ERMP1|RBBP8 | ERMP1 | RBBP8 | 9 | 18 | -1 | 1 | 5 | 2 | 2 | 0.18 | 5830727 | 20555116 | tier1 | In-frame | 5785 | NA | 0.35561 |
| LUSC | TCGA-77-8143-01A | TCGA-77-8143 | ETNK1|CMAS | ETNK1 | CMAS | 12 | 12 | 1 | 1 | 8 | 5 | 5 | 0.041 | 22812088 | 22208083 | tier1 | In-frame | 5850 | NA | 0.33713 |
| LUSC | TCGA-90-A4EE-01A | TCGA-90-A4EE | FAM174B|LRRC49 | FAM174B | LRRC49 | 15 | 15 | -1 | 1 | 4 | 1 | 1 | 3.4 | 93198546 | 71300718 | tier2 | In-frame | 6107 | NA | 0.34215 |
| LUSC | TCGA-92-7340-01A | TCGA-92-7340 | FAM59A|FAM38B | FAM59A | FAM38B | 18 | 18 | -1 | -1 | 3 | 2 | 1 | 0.016 | 29972858 | 10911226 | tier3 | In-frame | 6191 | NA | 0.34265 |
| LUSC | TCGA-63-A5MJ-01A | TCGA-63-A5MJ | FAT1|IRF2 | FAT1 | IRF2 | 4 | 4 | -1 | -1 | 92 | 84 | 72 | 0.35 | 187530337 | 185350224 | tier1 | CDS-5UTR | 6268 | NA | 0.37473 |
| LUSC | TCGA-85-8071-01A | TCGA-85-8071 | FAT2|ATOX1 | FAT2 | ATOX1 | 5 | 5 | -1 | -1 | 7 | 2 | 2 | 0.19 | 150921846 | 151131340 | tier1 | Out-of-frame | 6273 | NA | 0.3541 |
| LUSC | TCGA-34-5232-01A | TCGA-34-5232 | FBRSL1|CKAP4 | FBRSL1 | CKAP4 | 12 | 12 | 1 | -1 | 11 | 16 | 16 | 0.05 | 133067447 | 106670327 | tier1 | NA | 6290 | NA | 0.34596 |
| LUSC | TCGA-60-2715-01A | TCGA-60-2715 | FBXL20|GRB7 | FBXL20 | GRB7 | 17 | 17 | -1 | 1 | 2 | 1 | 1 | 0.82 | 37557614 | 37898505 | tier3 | CDS-5UTR | 6306 | NA | 0.38021 |
| LUSC | TCGA-33-4587-01A | TCGA-33-4587 | FBXO42|C19orf26 | FBXO42 | C19orf26 | 1 | 19 | -1 | -1 | 13 | 14 | 10 | 2 | 16582206 | 1231274 | tier1 | Out-of-frame | 6355 | NA | 0 |
| LUSC | TCGA-56-A4BY-01A | TCGA-56-A4BY | FBXW7|TMEM154 | FBXW7 | TMEM154 | 4 | 4 | -1 | -1 | 6 | 10 | 10 | 0.003 | 153456093 | 153574079 | tier1 | 5UTR-CDS | 6376 | NA | 0.36698 |
| LUSC | TCGA-51-6867-01A | TCGA-51-6867 | FGF12|LRRC15 | FGF12 | LRRC15 | 3 | 3 | -1 | -1 | 9 | 6 | 5 | 0.18 | 192444970 | 194081775 | tier1 | CDS-5UTR | 6446 | NA | 0.35318 |
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