Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | DISP2|PHGR1 | DISP2 | PHGR1 | 15 | 15 | 1 | 1 | 8 | 4 | 3 | 0.002 | 40650641 | 40648274 | tier1 | Out-of-frame | 4861 | validated | 0.3353 |
| LUSC | TCGA-66-2771-01A | TCGA-66-2771 | DLG1|BDH1 | DLG1 | BDH1 | 3 | 3 | -1 | -1 | 4 | 6 | 6 | 2.2 | 197009550 | 197273357 | tier1 | CDS-5UTR | 4867 | NA | 0.37972 |
| LUSC | TCGA-85-7697-01A | TCGA-85-7697 | DLG5|POLR3A | DLG5 | POLR3A | 10 | 10 | -1 | -1 | 2 | 3 | 2 | 0.003 | 79685975 | 79750925 | tier3 | Out-of-frame | 4889 | NA | 0.37348 |
| LUSC | TCGA-22-4594-01A | TCGA-22-4594 | DMTF1|GRM3 | DMTF1 | GRM3 | 7 | 7 | 1 | 1 | 3 | 1 | 1 | 2.4 | 86794366 | 86415577 | tier3 | Out-of-frame | 4912 | NA | 0.37364 |
| LUSC | TCGA-21-1080-01A | TCGA-21-1080 | DNAJC2|SLC26A5 | DNAJC2 | SLC26A5 | 7 | 7 | -1 | -1 | 56 | 52 | 51 | 0.29 | 102978183 | 103029561 | tier2 | Out-of-frame | 4942 | NA | 0.34868 |
| LUSC | TCGA-46-3765-01A | TCGA-46-3765 | DUSP12|CR2 | DUSP12 | CR2 | 1 | 1 | 1 | 1 | 17 | 9 | 9 | 0.66 | 161719935 | 207658809 | tier1 | In-frame | 5177 | NA | 0.36886 |
| LUSC | TCGA-O2-A52S-01A | TCGA-O2-A52S | DUSP14|ATP6V0A1 | DUSP14 | ATP6V0A1 | 17 | 17 | 1 | 1 | 91 | 35 | 31 | 2.8 | 35850064 | 40629657 | tier1 | 5UTR-CDS | 5179 | NA | 0.36187 |
| LUSC | TCGA-98-A53H-01A | TCGA-98-A53H | DYNC1H1|CDHR3 | DYNC1H1 | CDHR3 | 14 | 7 | 1 | 1 | 2 | 22 | 22 | 0.078 | 102517128 | 105668108 | tier4 | 3UTR-CDS | 5201 | NA | 0.34833 |
| LUSC | TCGA-56-5898-01A | TCGA-56-5898 | ECE2|HTR3C | ECE2 | HTR3C | 3 | 3 | 1 | 1 | 47 | 35 | 31 | 0.21 | 183967678 | 183777616 | tier1 | In-frame | 5261 | NA | 0.34563 |
| LUSC | TCGA-77-8145-01A | TCGA-77-8145 | ECT2|DGKG | ECT2 | DGKG | 3 | 3 | 1 | -1 | 3 | 1 | 1 | 0.074 | 172486933 | 186038496 | tier2 | CDS-5UTR | 5264 | NA | 0.37232 |
| LUSC | TCGA-66-2771-01A | TCGA-66-2771 | EFNA3|FLAD1 | EFNA3 | FLAD1 | 1 | 1 | 1 | 1 | 13 | 15 | 10 | 0.58 | 155051545 | 154965189 | tier1 | Out-of-frame | 5352 | NA | 0.36393 |
| LUSC | TCGA-66-2771-01A | TCGA-66-2771 | EFNA4|FLAD1 | EFNA4 | FLAD1 | 1 | 1 | 1 | 1 | 4 | 6 | 5 | 0.41 | 155039916 | 154965189 | tier1 | Out-of-frame | 5356 | NA | 0.36692 |
| LUSC | TCGA-85-8351-01A | TCGA-85-8351 | EGFR|TEAD2 | EGFR | TEAD2 | 7 | 19 | 1 | -1 | 17 | 12 | 12 | 0.07 | 55087058 | 49862756 | tier1 | In-frame | 5385 | NA | 0.39103 |
| LUSC | TCGA-43-8115-01A | TCGA-43-8115 | EGLN1|PTPRF | EGLN1 | PTPRF | 1 | 1 | -1 | 1 | 13 | 5 | 5 | 0.046 | 231556744 | 44083116 | tier1 | In-frame | 5387 | NA | 0.38158 |
| LUSC | TCGA-66-2759-01A | TCGA-66-2759 | EGLN2|PLD3 | EGLN2 | PLD3 | 19 | 19 | 1 | 1 | 44 | 30 | 25 | 0.17 | 41307320 | 40877580 | tier1 | In-frame | 5388 | non-validated | 0.35327 |
| LUSC | TCGA-60-2713-01A | TCGA-60-2713 | EIF2C2|PTK2 | EIF2C2 | PTK2 | 8 | 8 | -1 | -1 | 16 | 59 | 51 | 7.7 | 141645584 | 141685598 | tier1 | Out-of-frame | 5435 | non-validated | 0.38833 |
| LUSC | TCGA-LA-A7SW-01A | TCGA-LA-A7SW | EIF2S2|ADRA1D | EIF2S2 | ADRA1D | 20 | 20 | -1 | -1 | 6 | 32 | 32 | 0.021 | 32678323 | 4202777 | tier1 | In-frame | 5443 | NA | 0.37677 |
| LUSC | TCGA-63-6202-01A | TCGA-63-6202 | EIF4G2|UTRN | EIF4G2 | UTRN | 11 | 6 | -1 | 1 | 2 | 1 | 1 | 0.14 | 10818601 | 144665237 | tier3 | NA | 5469 | NA | 0.37388 |
| LUSC | TCGA-85-8580-01A | TCGA-85-8580 | EIF4G3|ECE1 | EIF4G3 | ECE1 | 1 | 1 | -1 | -1 | 13 | 7 | 7 | 0.093 | 21377359 | 21586885 | tier1 | 5UTR-CDS | 5473 | NA | 0.36349 |
| LUSC | TCGA-60-2706-01A | TCGA-60-2706 | ELL|CRLF1 | ELL | CRLF1 | 19 | 19 | -1 | -1 | 38 | 12 | 12 | 0.26 | 18632731 | 18710656 | tier1 | Out-of-frame | 5513 | NA | 0.36333 |
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