Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-66-2781-01A | TCGA-66-2781 | CNTN5|TTYH1 | CNTN5 | TTYH1 | 11 | 19 | 1 | 1 | 2 | 2 | 2 | 1.6 | 98892000 | 54946722 | tier2 | 5UTR-CDS | 3954 | NA | 0.35067 |
| LUSC | TCGA-22-5485-01A | TCGA-22-5485 | COBLL1|SCN3A | COBLL1 | SCN3A | 2 | 2 | -1 | -1 | 9 | 4 | 4 | 0.88 | 165600197 | 166043257 | tier1 | CDS-5UTR | 3961 | non-validated | 0.35714 |
| LUSC | TCGA-18-3415-01A | TCGA-18-3415 | COBLL1|SLC38A11 | COBLL1 | SLC38A11 | 2 | 2 | -1 | -1 | 2 | 3 | 3 | 0.1 | 165697666 | 165755240 | tier4 | Out-of-frame | 3963 | non-validated | 0.3389 |
| LUSC | TCGA-85-8071-01A | TCGA-85-8071 | COL17A1|WDR96 | COL17A1 | WDR96 | 10 | 10 | -1 | -1 | 26 | 5 | 5 | 0.31 | 105803259 | 105985315 | tier1 | In-frame | 3998 | NA | 0.35696 |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | COL4A5|RNF128 | COL4A5 | RNF128 | X | X | 1 | 1 | 3 | 3 | 2 | 0.19 | 107829977 | 106016143 | tier1 | In-frame | 4034 | NA | 0.36863 |
| LUSC | TCGA-60-2714-01A | TCGA-60-2714 | CREBBP|HCN1 | CREBBP | HCN1 | 16 | 5 | -1 | -1 | 57 | 20 | 18 | 0.17 | 3900298 | 45645710 | tier1 | Out-of-frame | 4204 | NA | 0.38892 |
| LUSC | TCGA-22-5478-01A | TCGA-22-5478 | CRTC1|LYPD4 | CRTC1 | LYPD4 | 19 | 19 | 1 | -1 | 10 | 6 | 6 | 0.5 | 18860685 | 42343098 | tier4 | In-frame | 4245 | NA | 0.35266 |
| LUSC | TCGA-22-5489-01A | TCGA-22-5489 | CRYBG3|IL20RB | CRYBG3 | IL20RB | 3 | 3 | 1 | 1 | 5 | 3 | 3 | 4.2 | 97600063 | 136728955 | tier1 | In-frame | 4250 | NA | 0.3424 |
| LUSC | TCGA-63-5131-01A | TCGA-63-5131 | CSMD1|C15orf41 | CSMD1 | C15orf41 | 8 | 15 | -1 | 1 | 60 | 38 | 37 | 0.32 | 4851854 | 37100525 | tier1 | Out-of-frame | 4270 | NA | 0 |
| LUSC | TCGA-92-8065-01A | TCGA-92-8065 | CSTA|CASR | CSTA | CASR | 3 | 3 | 1 | 1 | 136 | 96 | 90 | 1.8 | 122056495 | 121994659 | tier1 | In-frame | 4303 | NA | 0.37493 |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | CTNNB1|TCOF1 | CTNNB1 | TCOF1 | 3 | 5 | 1 | 1 | 2 | 11 | 2 | 0.2 | 41281934 | 149777917 | tier4 | 3UTR-CDS | 4363 | NA | 0.37566 |
| LUSC | TCGA-68-8251-01A | TCGA-68-8251 | CTNND1|GYLTL1B | CTNND1 | GYLTL1B | 11 | 11 | 1 | 1 | 8 | 5 | 4 | 0.59 | 57572252 | 45944372 | tier1 | CDS-5UTR | 4372 | NA | 0.38035 |
| LUSC | TCGA-94-7033-01A | TCGA-94-7033 | CTTN|DSG1 | CTTN | DSG1 | 11 | 18 | 1 | 1 | 35 | 14 | 11 | 0.59 | 70269101 | 28906544 | tier4 | In-frame | 4414 | NA | 0.38171 |
| LUSC | TCGA-43-7657-01A | TCGA-43-7657 | CWF19L2|AMICA1 | CWF19L2 | AMICA1 | 11 | 11 | -1 | -1 | 5 | 1 | 1 | 0.23 | 107286935 | 118076706 | tier3 | Out-of-frame | 4469 | NA | 0.3497 |
| LUSC | TCGA-85-7950-01A | TCGA-85-7950 | CXCL13|UTRN | CXCL13 | UTRN | 4 | 6 | 1 | 1 | 2 | 17 | 15 | 0.53 | 78532988 | 144665237 | tier3 | NA | 4474 | NA | 0.37634 |
| LUSC | TCGA-85-8070-01A | TCGA-85-8070 | DAPP1|SLC4A4 | DAPP1 | SLC4A4 | 4 | 4 | 1 | 1 | 20 | 10 | 10 | 0.005 | 100774505 | 72399944 | tier1 | In-frame | 4555 | NA | 0.37287 |
| LUSC | TCGA-92-7341-01A | TCGA-92-7341 | DCBLD2|ABI3BP | DCBLD2 | ABI3BP | 3 | 3 | -1 | -1 | 21 | 19 | 17 | 0.01 | 98619966 | 100499053 | tier1 | In-frame | 4594 | NA | 0.35756 |
| LUSC | TCGA-60-2704-01A | TCGA-60-2704 | DCBLD2|KALRN | DCBLD2 | KALRN | 3 | 3 | -1 | 1 | 2 | 5 | 5 | 0.056 | 98568305 | 124193510 | tier2 | Out-of-frame | 4595 | NA | 0.37226 |
| LUSC | TCGA-85-7698-01A | TCGA-85-7698 | DDHD2|PPAPDC1B | DDHD2 | PPAPDC1B | 8 | 8 | 1 | -1 | 24 | 14 | 13 | 0.38 | 38103468 | 38123829 | tier1 | In-frame | 4635 | NA | 0.33793 |
| LUSC | TCGA-NC-A5HL-01A | TCGA-NC-A5HL | DGUOK|STAMBP | DGUOK | STAMBP | 2 | 2 | 1 | 1 | 46 | 25 | 23 | 0.006 | 74174033 | 74100479 | tier1 | CDS-3UTR | 4765 | NA | 0.3653 |
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