Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-66-2800-01A | TCGA-66-2800 | C1QL1|SLC16A5 | C1QL1 | SLC16A5 | 17 | 17 | -1 | 1 | 19 | 7 | 5 | 0.11 | 43044820 | 73094133 | tier1 | Out-of-frame | 2626 | NA | 0.3496 |
| LUSC | TCGA-58-A46L-01A | TCGA-58-A46L | C3orf52|CD86 | C3orf52 | CD86 | 3 | 3 | 1 | 1 | 2 | 1 | 1 | 0.76 | 111821812 | 121836895 | tier2 | Out-of-frame | 2712 | NA | 0 |
| LUSC | TCGA-98-A53A-01A | TCGA-98-A53A | CAMK2D|ANK2 | CAMK2D | ANK2 | 4 | 4 | -1 | 1 | 8 | 4 | 4 | 0.87 | 114430794 | 114302613 | tier1 | In-frame | 2921 | NA | 0.38162 |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | CASC3|ERBB2 | CASC3 | ERBB2 | 17 | 17 | 1 | 1 | 4 | 5 | 3 | 0.24 | 38297860 | 37844949 | tier2 | CDS-5UTR | 3004 | NA | 0.38537 |
| LUSC | TCGA-56-A4BX-01A | TCGA-56-A4BX | CBLC|PVR | CBLC | PVR | 19 | 19 | 1 | 1 | 6 | 2 | 2 | 0.092 | 45303707 | 45164559 | tier1 | 3UTR-CDS | 3079 | NA | 0.38105 |
| LUSC | TCGA-37-4130-01A | TCGA-37-4130 | CCNY|CREM | CCNY | CREM | 10 | 10 | 1 | 1 | 7 | 4 | 3 | 0.37 | 35626135 | 35500584 | tier1 | Out-of-frame | 3236 | NA | 0.38168 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | CCNY|VWA3B | CCNY | VWA3B | 10 | 2 | 1 | 1 | 12 | 8 | 6 | 0.18 | 35790463 | 98906974 | tier1 | In-frame | 3239 | NA | 0.34836 |
| LUSC | TCGA-NC-A5HQ-01A | TCGA-NC-A5HQ | CCT2|FRS2 | CCT2 | FRS2 | 12 | 12 | 1 | 1 | 6 | 6 | 6 | 0.044 | 69987393 | 69962785 | tier1 | CDS-5UTR | 3248 | NA | 0.38128 |
| LUSC | TCGA-85-6560-01A | TCGA-85-6560 | CCT7|UTRN | CCT7 | UTRN | 2 | 6 | 1 | 1 | 2 | 5 | 2 | 0.26 | 73480132 | 144665237 | tier3 | NA | 3258 | NA | 0.37621 |
| LUSC | TCGA-43-8115-01A | TCGA-43-8115 | CDC42EP4|SDK2 | CDC42EP4 | SDK2 | 17 | 17 | -1 | -1 | 6 | 7 | 7 | 0.008 | 71308032 | 71348776 | tier1 | 5UTR-CDS | 3351 | NA | 0.3578 |
| LUSC | TCGA-46-6025-01A | TCGA-46-6025 | CELSR1|SEZ6L | CELSR1 | SEZ6L | 22 | 22 | -1 | 1 | 378 | 251 | 235 | 0.22 | 46929524 | 26688372 | tier1 | In-frame | 3512 | NA | 0.36634 |
| LUSC | TCGA-56-A4BY-01A | TCGA-56-A4BY | CELSR2|FAR1 | CELSR2 | FAR1 | 1 | 11 | 1 | 1 | 2 | 2 | 2 | 0.63 | 109818372 | 13744912 | tier4 | NA | 3514 | NA | 0.36404 |
| LUSC | TCGA-58-8392-01A | TCGA-58-8392 | CENPP|PTPRD | CENPP | PTPRD | 9 | 9 | 1 | -1 | 3 | 3 | 3 | 0.91 | 95142141 | 10341017 | tier1 | CDS-5UTR | 3528 | NA | 0.36637 |
| LUSC | TCGA-46-3765-01A | TCGA-46-3765 | CHRM3|CASQ1 | CHRM3 | CASQ1 | 1 | 1 | 1 | 1 | 9 | 5 | 5 | 0.17 | 239990678 | 160162592 | tier1 | 5UTR-CDS | 3704 | NA | 0.37549 |
| LUSC | TCGA-66-2782-01A | TCGA-66-2782 | CISD1|GABRA1 | CISD1 | GABRA1 | 10 | 5 | 1 | 1 | 19 | 10 | 9 | 0.38 | 60029064 | 161322672 | tier1 | In-frame | 3738 | NA | 0.3659 |
| LUSC | TCGA-22-5478-01A | TCGA-22-5478 | CLOCK|SRD5A3 | CLOCK | SRD5A3 | 4 | 4 | -1 | 1 | 9 | 6 | 6 | 0.02 | 56308599 | 56225513 | tier4 | In-frame | 3828 | NA | 0.36671 |
| LUSC | TCGA-94-7943-01A | TCGA-94-7943 | CLPB|FCHSD2 | CLPB | FCHSD2 | 11 | 11 | -1 | -1 | 8 | 3 | 2 | 0.012 | 72005369 | 72613683 | tier1 | In-frame | 3833 | non-validated | 0.37141 |
| LUSC | TCGA-66-2771-01A | TCGA-66-2771 | CLPTM1|CEACAM16 | CLPTM1 | CEACAM16 | 19 | 19 | 1 | 1 | 14 | 5 | 5 | 0.011 | 45465332 | 45213768 | tier4 | Out-of-frame | 3840 | NA | 0.35017 |
| LUSC | TCGA-NK-A5D1-01A | TCGA-NK-A5D1 | CLPTM1|OPA3 | CLPTM1 | OPA3 | 19 | 19 | 1 | -1 | 2 | 3 | 3 | 0.69 | 45465332 | 46057169 | tier3 | Out-of-frame | 3843 | NA | 0.34252 |
| LUSC | TCGA-98-A539-01A | TCGA-98-A539 | CNOT1|GOT2 | CNOT1 | GOT2 | 16 | 16 | -1 | -1 | 15 | 5 | 5 | 0.72 | 58663632 | 58757806 | tier4 | 5UTR-CDS | 3922 | NA | 0.36277 |
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