Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-43-7658-01A | TCGA-43-7658 | ART3|SLC25A13 | ART3 | SLC25A13 | 4 | 7 | 1 | -1 | 52 | 49 | 46 | 100 | 76997111 | 95776008 | tier1 | In-frame | 1469 | NA | 0.34414 |
| LUSC | TCGA-22-5483-01A | TCGA-22-5483 | ATF3|CDH20 | ATF3 | CDH20 | 1 | 18 | 1 | 1 | 2 | 3 | 2 | 0.006 | 212791576 | 59157635 | tier3 | CDS-5UTR | 1597 | NA | 0.36618 |
| LUSC | TCGA-98-A53B-01A | TCGA-98-A53B | ATG5|EPHA7 | ATG5 | EPHA7 | 6 | 6 | -1 | -1 | 70 | 38 | 7 | 0.75 | 106756239 | 93982140 | tier1 | Out-of-frame | 1631 | NA | 0.37232 |
| LUSC | TCGA-77-A5G6-01A | TCGA-77-A5G6 | ATG5|NTM | ATG5 | NTM | 6 | 11 | -1 | 1 | 26 | 43 | 37 | 1.3 | 106696025 | 131781458 | tier1 | Out-of-frame | 1634 | NA | 0.34203 |
| LUSC | TCGA-O2-A52V-01A | TCGA-O2-A52V | ATP10D|GABRA2 | ATP10D | GABRA2 | 4 | 4 | 1 | -1 | 53 | 40 | 35 | 0.11 | 47527659 | 46252621 | tier1 | Out-of-frame | 1661 | NA | 0.34427 |
| LUSC | TCGA-60-2711-01A | TCGA-60-2711 | ATP13A4|NAALADL2 | ATP13A4 | NAALADL2 | 3 | 3 | -1 | 1 | 3 | 1 | 1 | 0.005 | 193272529 | 174814580 | tier3 | Out-of-frame | 1688 | non-validated | 0.34271 |
| LUSC | TCGA-21-1082-01A | TCGA-21-1082 | ATP1B3|RNF7 | ATP1B3 | RNF7 | 3 | 3 | 1 | 1 | 9 | 14 | 13 | 2.3 | 141595752 | 141464001 | tier1 | In-frame | 1702 | non-validated | 0.36623 |
| LUSC | TCGA-94-8491-01A | TCGA-94-8491 | ATP2C2|WFDC1 | ATP2C2 | WFDC1 | 16 | 16 | 1 | 1 | 4 | 4 | 4 | 2.3 | 84402320 | 84358025 | tier1 | Out-of-frame | 1733 | NA | 0.33638 |
| LUSC | TCGA-56-8503-01A | TCGA-56-8503 | ATRN|TNKS2 | ATRN | TNKS2 | 20 | 10 | 1 | 1 | 22 | 6 | 6 | 0.54 | 3565527 | 93572740 | tier1 | In-frame | 1788 | NA | 0.36897 |
| LUSC | TCGA-77-A5GH-01A | TCGA-77-A5GH | ATRX|LPAR4 | ATRX | LPAR4 | X | X | -1 | 1 | 4 | 2 | 1 | 0.007 | 77041468 | 78010288 | tier2 | CDS-5UTR | 1796 | NA | 0.38117 |
| LUSC | TCGA-98-A53A-01A | TCGA-98-A53A | AXIN1|TMEM8A | AXIN1 | TMEM8A | 16 | 16 | -1 | -1 | 5 | 2 | 2 | 0.039 | 364543 | 427848 | tier1 | Out-of-frame | 1835 | NA | 0.37285 |
| LUSC | TCGA-46-3765-01A | TCGA-46-3765 | B4GALT1|KIAA1045 | B4GALT1 | KIAA1045 | 9 | 9 | -1 | 1 | 4 | 8 | 8 | 3 | 33120417 | 34971292 | tier1 | CDS-5UTR | 1871 | NA | 0.36123 |
| LUSC | TCGA-22-5480-01A | TCGA-22-5480 | BAG4|FGFR1 | BAG4 | FGFR1 | 8 | 8 | 1 | -1 | 33 | 25 | 23 | 0.27 | 38050313 | 38283763 | tier2 | In-frame | 1902 | NA | 0.38443 |
| LUSC | TCGA-63-6202-01A | TCGA-63-6202 | BMPR2|ATG4B | BMPR2 | ATG4B | 2 | 2 | 1 | 1 | 10 | 1 | 1 | 100 | 203332412 | 242590425 | tier3 | In-frame | 2140 | NA | 0.38129 |
| LUSC | TCGA-22-1002-01A | TCGA-22-1002 | BRAF|SLC26A4 | BRAF | SLC26A4 | 7 | 7 | -1 | 1 | 5 | 1 | 1 | 0.43 | 140534409 | 107323647 | tier3 | In-frame | 2188 | NA | 0.38622 |
| LUSC | TCGA-98-8021-01A | TCGA-98-8021 | BTBD3|MACF1 | BTBD3 | MACF1 | 20 | 1 | 1 | 1 | 11 | 9 | 6 | 1.2 | 11871602 | 39715686 | tier1 | 5UTR-CDS | 2270 | NA | 0.37267 |
| LUSC | TCGA-85-8070-01A | TCGA-85-8070 | C10orf118|GFRA1 | C10orf118 | GFRA1 | 10 | 10 | -1 | -1 | 6 | 2 | 2 | 0.058 | 115894672 | 117885068 | tier1 | Out-of-frame | 2307 | NA | 0 |
| LUSC | TCGA-NC-A5HJ-01A | TCGA-NC-A5HJ | C12orf65|SLC11A2 | C12orf65 | SLC11A2 | 12 | 12 | 1 | -1 | 2 | 3 | 2 | 0.045 | 123718078 | 51404549 | tier3 | 5UTR-CDS | 2450 | NA | 0 |
| LUSC | TCGA-21-1081-01A | TCGA-21-1081 | C19orf48|ACPT | C19orf48 | ACPT | 19 | 19 | -1 | 1 | 56 | 8 | 8 | 0.96 | 51302551 | 51297145 | tier1 | 5UTR-CDS | 2577 | NA | 0 |
| LUSC | TCGA-77-8140-01A | TCGA-77-8140 | C19orf6|SBNO2 | C19orf6 | SBNO2 | 19 | 19 | -1 | -1 | 12 | 6 | 6 | 0.039 | 1020771 | 1127764 | tier1 | In-frame | 2582 | NA | 0 |
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