TCSA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the GESPs in each cancer type

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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUSC	TCGA-37-4135-01A	TCGA-37-4135	ADD1\|FAM193A	ADD1	FAM193A	4	4	1	1	55	42	40	0.067	2845751	2733502	tier1	5UTR-CDS	495	validated	0.36559
LUSC	TCGA-46-3769-01A	TCGA-46-3769	AFAP1\|SLC45A1	AFAP1	SLC45A1	4	1	-1	1	20	13	12	0.22	7802169	8384366	tier1	CDS-5UTR	575	NA	0.36793
LUSC	TCGA-60-2695-01A	TCGA-60-2695	AFF1\|PTPN13	AFF1	PTPN13	4	4	1	1	2	1	1	0.83	87869723	87556405	tier3	CDS-5UTR	584	non-validated	0.37171
LUSC	TCGA-68-8250-01A	TCGA-68-8250	AGAP3\|GRM3	AGAP3	GRM3	7	7	1	1	2	1	1	1.7	150784159	86479686	tier2	Out-of-frame	633	validated	0.37198
LUSC	TCGA-39-5029-01A	TCGA-39-5029	AGRN\|NOC4L	AGRN	NOC4L	1	12	1	1	2	4	3	0.12	970704	132635526	tier3	In-frame	671	NA	0.3565
LUSC	TCGA-85-8276-01A	TCGA-85-8276	AHNAK\|DPF2	AHNAK	DPF2	11	11	-1	1	15	7	7	0.54	62259204	65116321	tier1	Out-of-frame	690	NA	0.37586
LUSC	TCGA-NC-A5HH-01A	TCGA-NC-A5HH	AHNAK\|NXF1	AHNAK	NXF1	11	11	-1	-1	46	13	12	0.15	62302475	62560173	tier1	Out-of-frame	692	NA	0.37107
LUSC	TCGA-33-6737-01A	TCGA-33-6737	ALDH3A1\|MYH9	ALDH3A1	MYH9	17	22	-1	-1	15	130	120	0.15	19651572	36723533	tier1	5UTR-CDS	801	NA	0.37893
LUSC	TCGA-60-2714-01A	TCGA-60-2714	ALKBH3\|ANO3	ALKBH3	ANO3	11	11	1	1	2	2	2	0.35	43905567	26646009	tier2	Out-of-frame	843	NA	0.33554
LUSC	TCGA-56-8083-01A	TCGA-56-8083	ANKIB1\|LMTK2	ANKIB1	LMTK2	7	7	1	1	14	11	11	0.56	91981956	97814363	tier1	In-frame	929	NA	0.36833
LUSC	TCGA-77-7141-01A	TCGA-77-7141	ANKRD12\|EPB41L3	ANKRD12	EPB41L3	18	18	1	-1	6	3	3	0.5	9182517	5489160	tier1	CDS-5UTR	960	NA	0.37222
LUSC	TCGA-56-8083-01A	TCGA-56-8083	ANO1\|FGF3	ANO1	FGF3	11	11	1	-1	97	39	37	0.15	69972301	69631191	tier1	Out-of-frame	1022	NA	0.36372
LUSC	TCGA-68-A59J-01A	TCGA-68-A59J	ANO1\|SLC7A8	ANO1	SLC7A8	11	14	1	-1	32	26	21	0.72	70017145	23635749	tier1	In-frame	1025	NA	0.35053
LUSC	TCGA-21-1071-01A	TCGA-21-1071	AP2A2\|EPS8L2	AP2A2	EPS8L2	11	11	1	1	8	6	6	0.15	994245	720062	tier1	In-frame	1072	NA	0.36882
LUSC	TCGA-58-8388-01A	TCGA-58-8388	AP2M1\|SEC63	AP2M1	SEC63	3	6	1	-1	2	4	4	0.48	183901878	108214782	tier4	NA	1083	NA	0.36922
LUSC	TCGA-85-7697-01A	TCGA-85-7697	AQP3\|B2M	AQP3	B2M	9	15	-1	1	2	1	1	0.067	33441152	45003720	tier3	3UTR-5UTR	1170	NA	0.36223
LUSC	TCGA-94-8491-01A	TCGA-94-8491	ARFGAP3\|PACSIN2	ARFGAP3	PACSIN2	22	22	-1	-1	5	2	2	0.33	43253120	43289619	tier1	In-frame	1189	NA	0.36295
LUSC	TCGA-85-A4CN-01A	TCGA-85-A4CN	ARHGAP44\|SLC13A5	ARHGAP44	SLC13A5	17	17	1	-1	3	1	1	0.49	12693208	6610097	tier4	Out-of-frame	1260	NA	0.32925
LUSC	TCGA-66-2800-01A	TCGA-66-2800	ARID1B\|ENPP4	ARID1B	ENPP4	6	6	1	1	32	31	26	0.009	157406039	46107288	tier1	CDS-5UTR	1351	NA	0.36698
LUSC	TCGA-43-3920-01A	TCGA-43-3920	ART3\|NUP54	ART3	NUP54	4	4	1	-1	63	56	54	0.13	77025122	77036647	tier1	Out-of-frame	1468	validated	0.3588

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