Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-95-A4VK-01A | TCGA-95-A4VK | ZNF354A|SLC12A7 | ZNF354A | SLC12A7 | 5 | 5 | -1 | -1 | 12 | 5 | 3 | 0.47 | 178152377 | 1089243 | tier1 | Out-of-frame | 20474 | NA | 0 |
| LUAD | TCGA-69-A59K-01A | TCGA-69-A59K | ZNF585B|CACNA1G | ZNF585B | CACNA1G | 19 | 17 | -1 | 1 | 20 | 16 | 11 | 0.83 | 37697942 | 48652904 | tier1 | In-frame | 20568 | NA | 0 |
| LUAD | TCGA-05-4402-01A | TCGA-05-4402 | ZNF618|SUSD1 | ZNF618 | SUSD1 | 9 | 9 | 1 | -1 | 4 | 2 | 2 | 1 | 116731440 | 114804240 | tier1 | Out-of-frame | 20596 | NA | 0 |
| LUAD | TCGA-05-4402-01A | TCGA-05-4402 | ZNF644|PTGER3 | ZNF644 | PTGER3 | 1 | 1 | -1 | -1 | 9 | 8 | 5 | 0.39 | 91487547 | 71318542 | tier1 | 5UTR-3UTR | 20607 | NA | 0 |
| LUAD | TCGA-97-A4M1-01A | TCGA-97-A4M1 | ZNF786|LANCL2 | ZNF786 | LANCL2 | 7 | 7 | -1 | 1 | 3 | 3 | 3 | 1.7 | 148787715 | 55466116 | tier1 | Out-of-frame | 20660 | NA | 0 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | AAK1|WFDC13 | AAK1 | WFDC13 | 2 | 20 | -1 | 1 | 37 | 45 | 37 | 0.76 | 69732701 | 44333083 | tier1 | In-frame | 13 | NA | 0.35146 |
| LUSC | TCGA-21-1083-01A | TCGA-21-1083 | AAMP|MARCH4 | AAMP | MARCH4 | 2 | 2 | -1 | -1 | 18 | 6 | 5 | 0.007 | 219134105 | 217124402 | tier4 | In-frame | 14 | non-validated | 0 |
| LUSC | TCGA-39-5028-01A | TCGA-39-5028 | ABCA1|ZBTB26 | ABCA1 | ZBTB26 | 9 | 9 | -1 | -1 | 2 | 1 | 1 | 5.8 | 107645320 | 125682223 | tier3 | CDS-5UTR | 36 | NA | 0.38763 |
| LUSC | TCGA-39-5028-01A | TCGA-39-5028 | ABCA1|ZBTB6 | ABCA1 | ZBTB6 | 9 | 9 | -1 | -1 | 6 | 5 | 5 | 0.44 | 107645320 | 125674360 | tier1 | CDS-5UTR | 37 | NA | 0.38585 |
| LUSC | TCGA-6A-AB49-01A | TCGA-6A-AB49 | ABCA5|C17orf67 | ABCA5 | C17orf67 | 17 | 17 | -1 | -1 | 44 | 34 | 31 | 2.3 | 67280094 | 54872541 | tier1 | Out-of-frame | 44 | NA | 0 |
| LUSC | TCGA-43-5670-01A | TCGA-43-5670 | ABCG1|CCDC134 | ABCG1 | CCDC134 | 21 | 22 | 1 | 1 | 4 | 10 | 9 | 0.54 | 43714770 | 42204879 | tier2 | CDS-5UTR | 80 | non-validated | 0.35489 |
| LUSC | TCGA-43-5670-01A | TCGA-43-5670 | ABCG1|MEI1 | ABCG1 | MEI1 | 21 | 22 | 1 | 1 | 2 | 3 | 3 | 2.9 | 43714770 | 42195258 | tier2 | In-frame | 81 | non-validated | 0.35236 |
| LUSC | TCGA-NC-A5HK-01A | TCGA-NC-A5HK | ABHD16A|LY6G6F | ABHD16A | LY6G6F | 6 | 6 | -1 | 1 | 11 | 4 | 4 | 0.33 | 31668719 | 31675235 | tier1 | In-frame | 89 | NA | 0.34891 |
| LUSC | TCGA-60-2719-01A | TCGA-60-2719 | AC091153.1|CHRNE | AC091153.1 | CHRNE | 17 | 17 | -1 | -1 | 9 | 4 | 2 | 0.36 | 4579652 | 4806058 | tier1 | In-frame | 203 | non-validated | 0.34282 |
| LUSC | TCGA-21-1082-01A | TCGA-21-1082 | ACVR2A|CASP8 | ACVR2A | CASP8 | 2 | 2 | 1 | 1 | 20 | 12 | 12 | 0.17 | 148674995 | 202131184 | tier1 | Out-of-frame | 398 | validated | 0.38497 |
| LUSC | TCGA-33-4538-01A | TCGA-33-4538 | ADAM23|CERKL | ADAM23 | CERKL | 2 | 2 | 1 | -1 | 32 | 14 | 14 | 0.72 | 207424842 | 182468806 | tier1 | Out-of-frame | 415 | NA | 0.3482 |
| LUSC | TCGA-77-7139-01A | TCGA-77-7139 | ADAM9|HTRA4 | ADAM9 | HTRA4 | 8 | 8 | 1 | 1 | 13 | 15 | 13 | 1 | 38884329 | 38839172 | tier1 | Out-of-frame | 419 | non-validated | 0.37765 |
| LUSC | TCGA-21-1076-01A | TCGA-21-1076 | ADAM9|RNF170 | ADAM9 | RNF170 | 8 | 8 | 1 | -1 | 49 | 36 | 26 | 0.046 | 38865502 | 42716998 | tier2 | In-frame | 423 | non-validated | 0.37684 |
| LUSC | TCGA-22-4604-01A | TCGA-22-4604 | ADAMTSL2|MAPKAP1 | ADAMTSL2 | MAPKAP1 | 9 | 9 | 1 | -1 | 6 | 4 | 4 | 0.044 | 136406123 | 128268696 | tier1 | In-frame | 449 | NA | 0.36086 |
| LUSC | TCGA-33-4533-01A | TCGA-33-4533 | ADCY9|PRKCB | ADCY9 | PRKCB | 16 | 16 | -1 | 1 | 19 | 10 | 8 | 0.052 | 4163751 | 23999829 | tier1 | In-frame | 480 | NA | 0.38191 |
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