Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | TUBGCP3|ATP11A | TUBGCP3 | ATP11A | 13 | 13 | -1 | 1 | 11 | 17 | 14 | 0.35 | 113158346 | 113490492 | tier1 | Out-of-frame | 18944 | NA | 0 |
| LUAD | TCGA-44-6775-01A | TCGA-44-6775 | TUFT1|CGN | TUFT1 | CGN | 1 | 1 | 1 | 1 | 10 | 8 | 8 | 0.046 | 151537090 | 151492642 | tier1 | In-frame | 18952 | non-validated | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | UBAC1|QSOX2 | UBAC1 | QSOX2 | 9 | 9 | -1 | -1 | 9 | 4 | 4 | 0.086 | 138839644 | 139118720 | tier1 | Out-of-frame | 19031 | validated | 0 |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | UNK|KIAA0195 | UNK | KIAA0195 | 17 | 17 | 1 | 1 | 13 | 8 | 8 | 0.065 | 73781065 | 73467881 | tier1 | CDS-5UTR | 19261 | NA | 0 |
| LUAD | TCGA-86-8074-01A | TCGA-86-8074 | UVRAG|KCNE3 | UVRAG | KCNE3 | 11 | 11 | 1 | -1 | 9 | 6 | 4 | 0.13 | 75563045 | 74173148 | tier2 | CDS-5UTR | 19474 | NA | 0 |
| LUAD | TCGA-55-6712-01A | TCGA-55-6712 | VBP1|GABRA3 | VBP1 | GABRA3 | X | X | 1 | -1 | 91 | 37 | 35 | 0.064 | 154444852 | 151393317 | tier1 | Out-of-frame | 19529 | NA | 0 |
| LUAD | TCGA-97-8171-01A | TCGA-97-8171 | VPS13B|SGCZ | VPS13B | SGCZ | 8 | 8 | 1 | -1 | 3 | 4 | 4 | 0.32 | 100205285 | 14181713 | tier1 | Out-of-frame | 19624 | validated | 0 |
| LUAD | TCGA-91-A4BC-01A | TCGA-91-A4BC | VPS72|ROBO2 | VPS72 | ROBO2 | 1 | 3 | -1 | 1 | 10 | 8 | 8 | 0.04 | 151156793 | 77617464 | tier1 | In-frame | 19671 | NA | 0 |
| LUAD | TCGA-86-7955-01A | TCGA-86-7955 | WAC|RDX | WAC | RDX | 10 | 11 | 1 | -1 | 2 | 4 | 1 | 0.05 | 28909462 | 110050642 | tier4 | NA | 19701 | NA | 0 |
| LUAD | TCGA-78-7542-01A | TCGA-78-7542 | WARS|UTRN | WARS | UTRN | 14 | 6 | -1 | 1 | 2 | 4 | 1 | 0.11 | 100800816 | 144665237 | tier3 | NA | 19709 | NA | 0 |
| LUAD | TCGA-55-A490-01A | TCGA-55-A490 | WARS2|DLG2 | WARS2 | DLG2 | 1 | 11 | -1 | -1 | 3 | 1 | 1 | 0.019 | 119683178 | 84865695 | tier2 | In-frame | 19710 | NA | 0 |
| LUAD | TCGA-44-4112-01A | TCGA-44-4112 | WHSC1L1|FGFR1 | WHSC1L1 | FGFR1 | 8 | 8 | -1 | -1 | 4 | 1 | 1 | 1.1 | 38239317 | 38315052 | tier3 | 5UTR-5UTR | 19846 | non-validated | 0 |
| LUAD | TCGA-50-5944-01A | TCGA-50-5944 | WRB|KCNJ15 | WRB | KCNJ15 | 21 | 21 | 1 | 1 | 8 | 1 | 1 | 0.58 | 40782863 | 39668848 | tier2 | 3UTR-5UTR | 19906 | NA | 0 |
| LUAD | TCGA-86-6851-01A | TCGA-86-6851 | XBP1|UTRN | XBP1 | UTRN | 22 | 6 | -1 | 1 | 2 | 16 | 6 | 0.81 | 29190549 | 144665237 | tier3 | NA | 19951 | NA | 0 |
| LUAD | TCGA-55-8094-01A | TCGA-55-8094 | YWHAE|SLC43A2 | YWHAE | SLC43A2 | 17 | 17 | -1 | -1 | 15 | 23 | 20 | 0.018 | 1257505 | 1489345 | tier1 | In-frame | 20056 | NA | 0 |
| LUAD | TCGA-78-7162-01A | TCGA-78-7162 | ZBTB20|EPHA6 | ZBTB20 | EPHA6 | 3 | 3 | -1 | 1 | 5 | 4 | 4 | 0.53 | 114219199 | 97439105 | tier4 | 5UTR-CDS | 20084 | NA | 0 |
| LUAD | TCGA-MP-A4TF-01A | TCGA-MP-A4TF | ZBTB20|LSAMP | ZBTB20 | LSAMP | 3 | 3 | -1 | -1 | 4 | 3 | 2 | 0.81 | 114412375 | 115805403 | tier1 | 5UTR-CDS | 20094 | NA | 0 |
| LUAD | TCGA-93-A4JO-01A | TCGA-93-A4JO | ZDHHC20|MIPEP | ZDHHC20 | MIPEP | 13 | 13 | -1 | -1 | 121 | 141 | 124 | 0.16 | 21987791 | 24330757 | tier4 | Out-of-frame | 20218 | NA | 0 |
| LUAD | TCGA-MN-A4N5-01A | TCGA-MN-A4N5 | ZNF146|NCAM2 | ZNF146 | NCAM2 | 19 | 21 | 1 | 1 | 11 | 4 | 3 | 1.1 | 36706098 | 22696703 | tier1 | 5UTR-CDS | 20371 | NA | 0 |
| LUAD | TCGA-44-2657-01A | TCGA-44-2657 | ZNF302|CACNA1A | ZNF302 | CACNA1A | 19 | 19 | 1 | -1 | 2 | 3 | 2 | 0.9 | 35169718 | 13366073 | tier2 | In-frame | 20454 | NA | 0 |
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