Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-35-4122-01A | TCGA-35-4122 | TMEM123|MMP20 | TMEM123 | MMP20 | 11 | 11 | -1 | -1 | 7 | 6 | 4 | 0.87 | 102319543 | 102480761 | tier1 | In-frame | 17949 | NA | 0 |
| LUAD | TCGA-05-4417-01A | TCGA-05-4417 | TMEM131|SPATA16 | TMEM131 | SPATA16 | 2 | 3 | -1 | -1 | 13 | 18 | 17 | 0.14 | 98543889 | 172766884 | tier1 | In-frame | 17959 | NA | 0 |
| LUAD | TCGA-93-8067-01A | TCGA-93-8067 | TMEM182|ADAMTS12 | TMEM182 | ADAMTS12 | 2 | 5 | 1 | -1 | 2 | 1 | 1 | 0.32 | 103414459 | 33751653 | tier2 | Out-of-frame | 17995 | NA | 0 |
| LUAD | TCGA-62-A46S-01A | TCGA-62-A46S | TMEM64|HHLA1 | TMEM64 | HHLA1 | 8 | 8 | -1 | -1 | 9 | 15 | 14 | 0.21 | 91657339 | 133078215 | tier1 | Out-of-frame | 18046 | NA | 0 |
| LUAD | TCGA-62-A46S-01A | TCGA-62-A46S | TMEM64|OC90 | TMEM64 | OC90 | 8 | 8 | -1 | -1 | 22 | 8 | 8 | 1.1 | 91657339 | 133058130 | tier1 | Out-of-frame | 18048 | NA | 0 |
| LUAD | TCGA-78-7145-01A | TCGA-78-7145 | TMEM67|STMN2 | TMEM67 | STMN2 | 8 | 8 | 1 | 1 | 4 | 2 | 1 | 0.37 | 94815912 | 80577050 | tier2 | In-frame | 18051 | NA | 0 |
| LUAD | TCGA-50-5072-01A | TCGA-50-5072 | TMEM87B|MERTK | TMEM87B | MERTK | 2 | 2 | 1 | 1 | 4 | 2 | 2 | 0.21 | 112813333 | 112751828 | tier1 | In-frame | 18056 | NA | 0 |
| LUAD | TCGA-50-6595-01A | TCGA-50-6595 | TNC|CDH3 | TNC | CDH3 | 9 | 16 | -1 | 1 | 2 | 1 | 1 | 0.29 | 117782839 | 68678151 | tier3 | 3UTR-5UTR | 18326 | NA | 0 |
| LUAD | TCGA-55-A493-01A | TCGA-55-A493 | TNFRSF6B|CD74 | TNFRSF6B | CD74 | 20 | 5 | 1 | -1 | 2 | 1 | 1 | 0.007 | 62322300 | 149792314 | tier4 | 5UTR-5UTR | 18342 | NA | 0 |
| LUAD | TCGA-05-4244-01A | TCGA-05-4244 | TOP1|CDH4 | TOP1 | CDH4 | 20 | 20 | 1 | 1 | 56 | 48 | 45 | 0.44 | 39658095 | 60318619 | tier1 | In-frame | 18442 | NA | 0 |
| LUAD | TCGA-69-8453-01A | TCGA-69-8453 | TRAPPC10|GRIK1 | TRAPPC10 | GRIK1 | 21 | 21 | 1 | -1 | 8 | 5 | 5 | 0.26 | 45432441 | 31066382 | tier1 | In-frame | 18569 | NA | 0 |
| LUAD | TCGA-55-6971-01A | TCGA-55-6971 | TRAPPC8|ANK3 | TRAPPC8 | ANK3 | 18 | 10 | -1 | -1 | 46 | 34 | 26 | 0.022 | 29522571 | 61965648 | tier1 | Out-of-frame | 18574 | NA | 0 |
| LUAD | TCGA-55-8091-01A | TCGA-55-8091 | TRIM24|NTRK2 | TRIM24 | NTRK2 | 7 | 9 | 1 | 1 | 13 | 11 | 9 | 0.71 | 138258387 | 87482158 | tier1 | In-frame | 18618 | NA | 0 |
| LUAD | TCGA-55-6543-01A | TCGA-55-6543 | TRIM33|RET | TRIM33 | RET | 1 | 10 | -1 | 1 | 21 | 21 | 20 | 1.7 | 114964058 | 43612032 | tier1 | In-frame | 18635 | NA | 0 |
| LUAD | TCGA-78-7220-01A | TCGA-78-7220 | TRMT11|SLC16A10 | TRMT11 | SLC16A10 | 6 | 6 | 1 | 1 | 2 | 1 | 1 | 0.83 | 126314968 | 111527795 | tier3 | In-frame | 18704 | NA | 0 |
| LUAD | TCGA-55-1594-01A | TCGA-55-1594 | TSPAN14|DYDC2 | TSPAN14 | DYDC2 | 10 | 10 | 1 | 1 | 29 | 15 | 14 | 0.46 | 82249070 | 82122191 | tier1 | CDS-5UTR | 18787 | non-validated | 0 |
| LUAD | TCGA-78-7150-01A | TCGA-78-7150 | TSPAN4|EPS8L2 | TSPAN4 | EPS8L2 | 11 | 11 | 1 | 1 | 9 | 17 | 14 | 0.17 | 850367 | 720062 | tier1 | In-frame | 18799 | NA | 0 |
| LUAD | TCGA-97-7552-01A | TCGA-97-7552 | TSPAN8|UTRN | TSPAN8 | UTRN | 12 | 6 | -1 | 1 | 2 | 10 | 9 | 0.19 | 71518881 | 144665237 | tier3 | NA | 18808 | NA | 0 |
| LUAD | TCGA-91-6831-01A | TCGA-91-6831 | TTC33|GRM5 | TTC33 | GRM5 | 5 | 11 | -1 | -1 | 2 | 1 | 1 | 0.061 | 40755926 | 88242672 | tier2 | 5UTR-CDS | 18850 | NA | 0 |
| LUAD | TCGA-55-A493-01A | TCGA-55-A493 | TUBB2A|SLC22A23 | TUBB2A | SLC22A23 | 6 | 6 | -1 | -1 | 12 | 5 | 5 | 0.38 | 3155859 | 3324236 | tier1 | In-frame | 18927 | NA | 0 |
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