Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-05-4398-01A | TCGA-05-4398 | STAT4|CXCR7 | STAT4 | CXCR7 | 2 | 2 | -1 | 1 | 103 | 62 | 53 | 0.22 | 192011339 | 237489083 | tier1 | CDS-5UTR | 17016 | non-validated | 0 |
| LUAD | TCGA-93-A4JP-01A | TCGA-93-A4JP | STIM1|NUP98 | STIM1 | NUP98 | 11 | 11 | 1 | -1 | 6 | 5 | 4 | 0.082 | 3968954 | 3765879 | tier1 | NA | 17038 | NA | 0 |
| LUAD | TCGA-55-6968-01A | TCGA-55-6968 | STK39|SCN3A | STK39 | SCN3A | 2 | 2 | -1 | -1 | 3 | 4 | 4 | 1.2 | 168986051 | 166012413 | tier1 | Out-of-frame | 17091 | NA | 0 |
| LUAD | TCGA-78-7536-01A | TCGA-78-7536 | STRBP|ASTN2 | STRBP | ASTN2 | 9 | 9 | -1 | -1 | 10 | 14 | 12 | 1.1 | 125932181 | 119414072 | tier1 | In-frame | 17100 | NA | 0 |
| LUAD | TCGA-44-3918-01A | TCGA-44-3918 | STRN3|PRKD1 | STRN3 | PRKD1 | 14 | 14 | -1 | -1 | 2 | 4 | 4 | 0.53 | 31495110 | 30194880 | tier2 | In-frame | 17119 | non-validated | 0 |
| LUAD | TCGA-91-6829-01A | TCGA-91-6829 | SULF1|ANKS1A | SULF1 | ANKS1A | 8 | 6 | 1 | 1 | 2 | 18 | 15 | 0.009 | 70573147 | 34977682 | tier4 | NA | 17173 | NA | 0 |
| LUAD | TCGA-86-8358-01A | TCGA-86-8358 | SYNE2|ACTN1 | SYNE2 | ACTN1 | 14 | 14 | 1 | -1 | 12 | 9 | 8 | 0.069 | 64319861 | 69378959 | tier1 | 5UTR-CDS | 17242 | NA | 0 |
| LUAD | TCGA-05-4398-01A | TCGA-05-4398 | SYPL1|AKR1D1 | SYPL1 | AKR1D1 | 7 | 7 | -1 | 1 | 71 | 92 | 68 | 100 | 105738136 | 137782612 | tier1 | In-frame | 17266 | non-validated | 0 |
| LUAD | TCGA-38-4632-01A | TCGA-38-4632 | SYTL2|DOK5 | SYTL2 | DOK5 | 11 | 20 | -1 | 1 | 28 | 31 | 23 | 1.5 | 85521997 | 53226927 | tier1 | 5UTR-CDS | 17282 | NA | 0 |
| LUAD | TCGA-05-4432-01A | TCGA-05-4432 | TADA1|CADM3 | TADA1 | CADM3 | 1 | 1 | -1 | 1 | 114 | 113 | 100 | 1 | 166838682 | 159169541 | tier1 | In-frame | 17304 | validated | 0 |
| LUAD | TCGA-50-5946-01A | TCGA-50-5946 | TANC2|CRB3 | TANC2 | CRB3 | 17 | 19 | 1 | 1 | 107 | 57 | 54 | 0.31 | 61345234 | 6465556 | tier1 | In-frame | 17371 | NA | 0 |
| LUAD | TCGA-97-7937-01A | TCGA-97-7937 | TASP1|SLC24A3 | TASP1 | SLC24A3 | 20 | 20 | -1 | 1 | 2 | 4 | 4 | 0.33 | 13398095 | 19646508 | tier4 | In-frame | 17427 | NA | 0 |
| LUAD | TCGA-95-A4VK-01A | TCGA-95-A4VK | TBC1D9B|ODZ2 | TBC1D9B | ODZ2 | 5 | 5 | -1 | 1 | 9 | 3 | 3 | 0.14 | 179334704 | 167302991 | tier1 | In-frame | 17510 | NA | 0 |
| LUAD | TCGA-93-A4JQ-01A | TCGA-93-A4JQ | TEC|NCAM2 | TEC | NCAM2 | 4 | 21 | -1 | 1 | 6 | 2 | 2 | 0.088 | 48271769 | 22746183 | tier1 | 5UTR-CDS | 17645 | NA | 0 |
| LUAD | TCGA-MP-A4TK-01A | TCGA-MP-A4TK | TGFBR2|NR2C2 | TGFBR2 | NR2C2 | 3 | 3 | 1 | 1 | 3 | 2 | 2 | 1.4 | 30648469 | 15055096 | tier1 | Out-of-frame | 17740 | NA | 0 |
| LUAD | TCGA-05-4426-01A | TCGA-05-4426 | TICAM1|IL12RB1 | TICAM1 | IL12RB1 | 19 | 19 | -1 | -1 | 70 | 57 | 47 | 0.2 | 4831626 | 18180523 | tier1 | 5UTR-CDS | 17823 | NA | 0 |
| LUAD | TCGA-44-A47B-01A | TCGA-44-A47B | TM9SF4|EYA2 | TM9SF4 | EYA2 | 20 | 20 | 1 | 1 | 11 | 12 | 12 | 0.003 | 30746317 | 45618640 | tier1 | CDS-5UTR | 17877 | NA | 0 |
| LUAD | TCGA-50-5066-01A | TCGA-50-5066 | TMED5|ADORA3 | TMED5 | ADORA3 | 1 | 1 | -1 | -1 | 3 | 2 | 2 | 0.41 | 93645611 | 112028462 | tier1 | Out-of-frame | 17918 | non-validated | 0 |
| LUAD | TCGA-05-4420-01A | TCGA-05-4420 | TMEM104|RAB37 | TMEM104 | RAB37 | 17 | 17 | 1 | 1 | 2 | 4 | 4 | 0.015 | 72773514 | 72736907 | tier4 | In-frame | 17925 | non-validated | 0 |
| LUAD | TCGA-55-6985-01A | TCGA-55-6985 | TMEM108|GAP43 | TMEM108 | GAP43 | 3 | 3 | 1 | 1 | 2 | 1 | 1 | 0.33 | 132948195 | 115394860 | tier3 | Out-of-frame | 17929 | NA | 0 |
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