Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-6982-01A | TCGA-55-6982 | SLC12A7|TMEM117 | SLC12A7 | TMEM117 | 5 | 12 | -1 | 1 | 17 | 11 | 10 | 0.003 | 1094269 | 44693363 | tier1 | Out-of-frame | 16019 | non-validated | 0 |
| LUAD | TCGA-44-2668-01A | TCGA-44-2668 | SLC16A1|SENP6 | SLC16A1 | SENP6 | 1 | 6 | -1 | 1 | 3 | 3 | 2 | 1 | 113471714 | 76331248 | tier1 | In-frame | 16026 | non-validated | 0 |
| LUAD | TCGA-55-7576-01A | TCGA-55-7576 | SLC16A5|OTOP2 | SLC16A5 | OTOP2 | 17 | 17 | 1 | 1 | 17 | 6 | 6 | 0.16 | 73085399 | 72923318 | tier1 | 5UTR-CDS | 16031 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | SLC1A3|C20orf196 | SLC1A3 | C20orf196 | 5 | 20 | 1 | 1 | 37 | 26 | 25 | 0.86 | 36608706 | 5753508 | tier1 | CDS-5UTR | 16044 | validated | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | SLC23A2|PHKB | SLC23A2 | PHKB | 20 | 16 | -1 | 1 | 5 | 7 | 7 | 1.4 | 4864288 | 47674946 | tier1 | Out-of-frame | 16079 | non-validated | 0 |
| LUAD | TCGA-49-4501-01A | TCGA-49-4501 | SLC2A13|RAB3IP | SLC2A13 | RAB3IP | 12 | 12 | -1 | 1 | 11 | 6 | 6 | 0.057 | 40223905 | 70209144 | tier1 | Out-of-frame | 16133 | NA | 0 |
| LUAD | TCGA-55-7727-01A | TCGA-55-7727 | SLC34A2|EEA1 | SLC34A2 | EEA1 | 4 | 12 | 1 | -1 | 2 | 4 | 2 | 0.42 | 25680370 | 93229203 | tier3 | NA | 16151 | NA | 0 |
| LUAD | TCGA-05-4405-01A | TCGA-05-4405 | SLC34A2|NDUFV1 | SLC34A2 | NDUFV1 | 4 | 11 | 1 | 1 | 2 | 5 | 1 | 0.81 | 25680370 | 67375697 | tier3 | NA | 16152 | NA | 0 |
| LUAD | TCGA-44-3917-01A | TCGA-44-3917 | SLC6A9|EIF2B3 | SLC6A9 | EIF2B3 | 1 | 1 | -1 | -1 | 3 | 3 | 3 | 0.64 | 44496978 | 45363116 | tier1 | 5UTR-CDS | 16284 | validated | 0 |
| LUAD | TCGA-38-4629-01A | TCGA-38-4629 | SLC7A6|GRXCR1 | SLC7A6 | GRXCR1 | 16 | 4 | 1 | 1 | 2 | 2 | 1 | 0.76 | 68300624 | 43022371 | tier3 | 5UTR-CDS | 16292 | NA | 0 |
| LUAD | TCGA-93-8067-01A | TCGA-93-8067 | SLC7A6|NFATC3 | SLC7A6 | NFATC3 | 16 | 16 | 1 | 1 | 19 | 5 | 5 | 4.8 | 68309152 | 68260253 | tier1 | Out-of-frame | 16293 | NA | 0 |
| LUAD | TCGA-49-AAR0-01A | TCGA-49-AAR0 | SMURF1|SLC26A5 | SMURF1 | SLC26A5 | 7 | 7 | -1 | -1 | 25 | 3 | 3 | 1.9 | 98741349 | 102993373 | tier1 | In-frame | 16449 | NA | 0 |
| LUAD | TCGA-78-8662-01A | TCGA-78-8662 | SMURF2|LRRC37A3 | SMURF2 | LRRC37A3 | 17 | 17 | -1 | -1 | 9 | 21 | 21 | 2.7 | 62657947 | 62852007 | tier1 | Out-of-frame | 16455 | NA | 0 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | SNX29|TNFRSF17 | SNX29 | TNFRSF17 | 16 | 16 | 1 | 1 | 9 | 5 | 5 | 0.002 | 12172772 | 12060052 | tier1 | In-frame | 16548 | NA | 0 |
| LUAD | TCGA-38-4632-01A | TCGA-38-4632 | SORL1|SYTL2 | SORL1 | SYTL2 | 11 | 11 | 1 | -1 | 2 | 8 | 8 | 0.7 | 121466481 | 85428573 | tier3 | In-frame | 16604 | NA | 0 |
| LUAD | TCGA-50-6594-01A | TCGA-50-6594 | SPINT2|DPF1 | SPINT2 | DPF1 | 19 | 19 | 1 | -1 | 61 | 78 | 71 | 0.15 | 38755638 | 38713348 | tier1 | Out-of-frame | 16731 | NA | 0 |
| LUAD | TCGA-55-A492-01A | TCGA-55-A492 | SPINT2|MAP4K1 | SPINT2 | MAP4K1 | 19 | 19 | 1 | -1 | 139 | 97 | 89 | 0.049 | 38781215 | 39087777 | tier1 | In-frame | 16732 | NA | 0 |
| LUAD | TCGA-95-A4VK-01A | TCGA-95-A4VK | SQSTM1|GRIA1 | SQSTM1 | GRIA1 | 5 | 5 | 1 | 1 | 14 | 1 | 1 | 0.59 | 179233591 | 153077604 | tier2 | 5UTR-CDS | 16810 | NA | 0 |
| LUAD | TCGA-38-4628-01A | TCGA-38-4628 | ST7|MET | ST7 | MET | 7 | 7 | 1 | 1 | 6 | 5 | 5 | 0.69 | 116593745 | 116339125 | tier1 | CDS-5UTR | 16964 | non-validated | 0 |
| LUAD | TCGA-55-7913-01B | TCGA-55-7913 | STAG2|GRIA3 | STAG2 | GRIA3 | X | X | 1 | 1 | 8 | 5 | 5 | 1.1 | 123164975 | 122459877 | tier1 | Out-of-frame | 16989 | NA | 0 |
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