Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-78-7146-01A | TCGA-78-7146 | SCN4A|TRIM47 | SCN4A | TRIM47 | 17 | 17 | -1 | -1 | 7 | 4 | 4 | 0.052 | 62034522 | 73872573 | tier1 | In-frame | 15426 | validated | 0 |
| LUAD | TCGA-55-7725-01A | TCGA-55-7725 | SDC2|CTD-3025N20.2 | SDC2 | CTD-3025N20.2 | 8 | 8 | 1 | -1 | 7 | 25 | 23 | 1.2 | 97506559 | 66447099 | tier1 | CDS-5UTR | 15462 | NA | 0 |
| LUAD | TCGA-97-8171-01A | TCGA-97-8171 | SDC4|AP1G2 | SDC4 | AP1G2 | 20 | 14 | -1 | -1 | 2 | 3 | 3 | 0.31 | 43953928 | 24037279 | tier3 | 3UTR-5UTR | 15467 | non-validated | 0 |
| LUAD | TCGA-86-7954-01A | TCGA-86-7954 | SDC4|NRG1 | SDC4 | NRG1 | 20 | 8 | -1 | 1 | 2728 | 3953 | 3527 | 3.5 | 43959006 | 32585467 | tier2 | In-frame | 15469 | NA | 0 |
| LUAD | TCGA-80-5608-01A | TCGA-80-5608 | SDC4|TSHZ2 | SDC4 | TSHZ2 | 20 | 20 | -1 | 1 | 8 | 5 | 5 | 0.73 | 43976965 | 52103683 | tier1 | CDS-3UTR | 15472 | NA | 0 |
| LUAD | TCGA-97-8177-01A | TCGA-97-8177 | SDC4|YWHAB | SDC4 | YWHAB | 20 | 20 | -1 | 1 | 43 | 20 | 18 | 0.29 | 43976965 | 43532634 | tier1 | In-frame | 15473 | NA | 0 |
| LUAD | TCGA-J2-A4AD-01A | TCGA-J2-A4AD | SEMA4B|CERS3 | SEMA4B | CERS3 | 15 | 15 | 1 | -1 | 13 | 6 | 6 | 1.8 | 90761061 | 100943070 | tier4 | In-frame | 15553 | NA | 0 |
| LUAD | TCGA-99-8033-01A | TCGA-99-8033 | SEMA4B|ZNF710 | SEMA4B | ZNF710 | 15 | 15 | 1 | 1 | 3 | 2 | 2 | 0.18 | 90728313 | 90610342 | tier1 | 5UTR-5UTR | 15557 | NA | 0 |
| LUAD | TCGA-91-8499-01A | TCGA-91-8499 | SENP2|CLCN2 | SENP2 | CLCN2 | 3 | 3 | 1 | -1 | 6 | 1 | 1 | 2.3 | 185304302 | 184076919 | tier2 | Out-of-frame | 15573 | NA | 0 |
| LUAD | TCGA-05-4396-01A | TCGA-05-4396 | SERINC2|ZNFX1 | SERINC2 | ZNFX1 | 1 | 20 | 1 | -1 | 2 | 7 | 3 | 0.16 | 31907521 | 47863418 | tier4 | 3UTR-CDS | 15637 | non-validated | 0 |
| LUAD | TCGA-49-4490-01A | TCGA-49-4490 | SERPINB5|CDH19 | SERPINB5 | CDH19 | 18 | 18 | 1 | -1 | 4 | 2 | 1 | 0.63 | 61151829 | 64178922 | tier2 | In-frame | 15667 | NA | 0 |
| LUAD | TCGA-44-7667-01A | TCGA-44-7667 | SF3B3|CDH15 | SF3B3 | CDH15 | 16 | 16 | 1 | 1 | 123 | 166 | 147 | 0.71 | 70578436 | 89245824 | tier1 | In-frame | 15729 | NA | 0 |
| LUAD | TCGA-64-1681-01A | TCGA-64-1681 | SGMS1|GAB2 | SGMS1 | GAB2 | 10 | 11 | -1 | -1 | 7 | 3 | 3 | 0.81 | 52086965 | 77991947 | tier1 | In-frame | 15781 | NA | 0 |
| LUAD | TCGA-73-4662-01A | TCGA-73-4662 | SHROOM2|BHLHE41 | SHROOM2 | BHLHE41 | X | 12 | 1 | -1 | 8 | 3 | 3 | 0.084 | 9754750 | 26277515 | tier1 | Out-of-frame | 15896 | NA | 0 |
| LUAD | TCGA-73-4658-01A | TCGA-73-4658 | SIK3|CD3D | SIK3 | CD3D | 11 | 11 | -1 | -1 | 3 | 4 | 4 | 0.67 | 116968859 | 118210209 | tier1 | Out-of-frame | 15916 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | SKAP1|HOXB3 | SKAP1 | HOXB3 | 17 | 17 | -1 | -1 | 4 | 2 | 2 | 2.9 | 46441151 | 46632980 | tier1 | CDS-5UTR | 15970 | validated | 0 |
| LUAD | TCGA-55-7573-01A | TCGA-55-7573 | SLAMF1|CD1A | SLAMF1 | CD1A | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 1 | 160616660 | 158224874 | tier3 | In-frame | 16000 | NA | 0 |
| LUAD | TCGA-86-7953-01A | TCGA-86-7953 | SLAMF1|CD1A | SLAMF1 | CD1A | 1 | 1 | -1 | 1 | 3 | 1 | 1 | 1 | 160604403 | 158224874 | tier4 | In-frame | 16001 | NA | 0 |
| LUAD | TCGA-55-8619-01A | TCGA-55-8619 | SLAMF1|CD1C | SLAMF1 | CD1C | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 4.3 | 160616660 | 158260924 | tier3 | In-frame | 16003 | NA | 0 |
| LUAD | TCGA-95-A4VK-01A | TCGA-95-A4VK | SLC12A7|RASGEF1C | SLC12A7 | RASGEF1C | 5 | 5 | -1 | -1 | 24 | 29 | 28 | 0.13 | 1111983 | 179565058 | tier2 | CDS-5UTR | 16013 | NA | 0 |
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