Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-MP-A4TF-01A | TCGA-MP-A4TF | RANBP10|SLC7A6 | RANBP10 | SLC7A6 | 16 | 16 | -1 | 1 | 2 | 1 | 1 | 0.34 | 67839331 | 68328608 | tier2 | In-frame | 14252 | NA | 0 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | RANBP17|GABRP | RANBP17 | GABRP | 5 | 5 | 1 | 1 | 5 | 4 | 3 | 0.17 | 170308900 | 170238960 | tier1 | Out-of-frame | 14254 | NA | 0 |
| LUAD | TCGA-44-3918-01A | TCGA-44-3918 | RAPGEF5|TMEM8C | RAPGEF5 | TMEM8C | 7 | 9 | -1 | -1 | 3 | 2 | 2 | 0.66 | 22396449 | 136385410 | tier1 | In-frame | 14302 | non-validated | 0 |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | RERE|ENO1 | RERE | ENO1 | 1 | 1 | -1 | -1 | 12 | 27 | 25 | 0.15 | 8525985 | 8934976 | tier1 | CDS-5UTR | 14554 | NA | 0 |
| LUAD | TCGA-55-7574-01A | TCGA-55-7574 | RERE|GPR157 | RERE | GPR157 | 1 | 1 | -1 | -1 | 20 | 8 | 7 | 0.12 | 8482787 | 9171548 | tier1 | Out-of-frame | 14555 | NA | 0 |
| LUAD | TCGA-55-7576-01A | TCGA-55-7576 | RERE|SLC2A5 | RERE | SLC2A5 | 1 | 1 | -1 | -1 | 3 | 2 | 2 | 0.34 | 8877219 | 9129653 | tier1 | 5UTR-5UTR | 14558 | NA | 0 |
| LUAD | TCGA-50-5946-01A | TCGA-50-5946 | RFX2|EPOR | RFX2 | EPOR | 19 | 19 | -1 | -1 | 26 | 14 | 13 | 0.36 | 6110404 | 11489454 | tier1 | 5UTR-CDS | 14609 | NA | 0 |
| LUAD | TCGA-44-7669-01A | TCGA-44-7669 | RNF215|GRIN2B | RNF215 | GRIN2B | 22 | 12 | -1 | -1 | 2 | 1 | 1 | 0.44 | 30817650 | 13906849 | tier2 | NA | 14823 | NA | 0 |
| LUAD | TCGA-69-7978-01A | TCGA-69-7978 | RP11-47I22.3|PRKCH | RP11-47I22.3 | PRKCH | 14 | 14 | 1 | 1 | 13 | 19 | 16 | 0.58 | 62037478 | 61952220 | tier1 | In-frame | 14933 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | RP11-73M18.2|MARK3 | RP11-73M18.2 | MARK3 | 14 | 14 | 1 | 1 | 73 | 18 | 13 | 0.027 | 104053701 | 103969219 | tier1 | In-frame | 14944 | non-validated | 0 |
| LUAD | TCGA-L9-A444-01A | TCGA-L9-A444 | RP2|C1orf43 | RP2 | C1orf43 | X | 1 | 1 | -1 | 41 | 23 | 15 | 0.23 | 46696637 | 154187050 | tier1 | In-frame | 14955 | NA | 0 |
| LUAD | TCGA-55-7227-01A | TCGA-55-7227 | RPRD2|CA14 | RPRD2 | CA14 | 1 | 1 | 1 | 1 | 2 | 4 | 4 | 0.48 | 150337395 | 150232546 | tier3 | In-frame | 15026 | NA | 0 |
| LUAD | TCGA-50-5932-01A | TCGA-50-5932 | RPS6KC1|CD34 | RPS6KC1 | CD34 | 1 | 1 | 1 | -1 | 30 | 24 | 19 | 2 | 213290752 | 208073348 | tier1 | In-frame | 15097 | non-validated | 0 |
| LUAD | TCGA-91-7771-01A | TCGA-91-7771 | RPS6KC1|TFPI | RPS6KC1 | TFPI | 1 | 2 | 1 | -1 | 3 | 6 | 6 | 2.7 | 213251158 | 188368497 | tier1 | CDS-5UTR | 15100 | NA | 0 |
| LUAD | TCGA-55-8092-01A | TCGA-55-8092 | RSRC1|NLGN1 | RSRC1 | NLGN1 | 3 | 3 | 1 | 1 | 2 | 4 | 4 | 0.71 | 158072697 | 173525470 | tier3 | In-frame | 15159 | NA | 0 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | S100A6|ABCF1 | S100A6 | ABCF1 | 1 | 6 | -1 | 1 | 2 | 17 | 1 | 0.002 | 153507075 | 30545853 | tier4 | 3UTR-CDS | 15233 | NA | 0 |
| LUAD | TCGA-NJ-A4YP-01A | TCGA-NJ-A4YP | S100A6|COL6A1 | S100A6 | COL6A1 | 1 | 21 | -1 | 1 | 2 | 291 | 3 | 0.35 | 153507075 | 47407069 | tier4 | 3UTR-CDS | 15236 | NA | 0 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | S1PR2|RAVER1 | S1PR2 | RAVER1 | 19 | 19 | -1 | -1 | 9 | 13 | 12 | 0.46 | 10341880 | 10429916 | tier1 | 5UTR-CDS | 15254 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | SAR1A|NPFFR1 | SAR1A | NPFFR1 | 10 | 10 | -1 | -1 | 18 | 14 | 13 | 0.52 | 71930169 | 72026147 | tier1 | 5UTR-CDS | 15309 | validated | 0 |
| LUAD | TCGA-50-6592-01A | TCGA-50-6592 | SC5DL|ARHGEF12 | SC5DL | ARHGEF12 | 11 | 11 | 1 | 1 | 2 | 2 | 2 | 0.84 | 121163525 | 120276827 | tier3 | 5UTR-CDS | 15358 | NA | 0 |
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